Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00787
         (759 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.0  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   6.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.1  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 195 SDLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENSN 320
           S L H+ S +   +  + + E +    D DD+ D+  SEN N
Sbjct: 264 SPLGHTLSMN-HKYEKIDKEEHESMDDDDDDDDDMSNSENQN 304


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 37 RDMSTVCRRSPAVELSTNYQR 99
          +DM++ C R  +V    NYQ+
Sbjct: 4  KDMNSACMRGGSVRTLNNYQQ 24


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 580 DVQLFGSIIEFRFHISYPGRSTVEFRDGRSQTSAVGITRGQNIYKLL 720
           D+   G++++F   ++Y      E + G + T    ++RG    KLL
Sbjct: 818 DLPALGTVLDFMSVMTYDYHGAWERQTGHNFTMEYLVSRGAPRGKLL 864


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 571 YAFHMQIIGKNFDDRLANRL 512
           Y  H QII +   +RL N+L
Sbjct: 233 YYMHQQIIARYNFERLCNKL 252


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,353
Number of Sequences: 336
Number of extensions: 4434
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20338724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)