Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00787
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    27   3.8  
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    27   3.8  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   3.8  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    26   5.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    26   5.1  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   8.9  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   8.9  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   8.9  
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    25   8.9  

>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 204 EHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENSNVV 326
           E   S S E   SV    LKPHP   +   ++ + + SN V
Sbjct: 334 ETVTSSSKERKRSVENEMLKPHPTIFESPPEITSFDKSNAV 374


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +2

Query: 473 YVSEHAAFGQGNLKSICETII---KVFADNLHVKRITGPMFNFLDRLL 607
           + +EH  + +  +++ C+T        AD+LH KR+ GP+ + +  L+
Sbjct: 156 WTAEHWDYLERRMQNFCQTYSLDHTQVADSLHEKRLHGPLSSLVKLLV 203


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 16   SQYVRSTRDMSTVCRRSPAVELSTNYQR-RDVW 111
            ++YV  T D  TVC ++  V    NY R   VW
Sbjct: 996  AEYVVDTGDKVTVCNKNAEVSAKHNYYRLAKVW 1028


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 129 REN*PNQSPRGTDIHISHIQRSSDLEHS 212
           R+  P++SPR   +  S ++ S D+ HS
Sbjct: 87  RDGLPSKSPRRPSVSASTVRNSDDVNHS 114


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 342 GHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLVKHTTQSLYTYL 482
           G T+     LL+ P  + +++   VV+  +  E +  HT ++L TYL
Sbjct: 388 GKTIQTIALLLSEPRGKPTLVVAPVVAIMQWKEEIDTHTNKALSTYL 434


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 411 LVVSAGELTESLVKHTTQSLYTYLNTLHS 497
           L+ + G++  + ++   +SLYT  + LHS
Sbjct: 798 LIANIGKIVSNFLQEQNESLYTKADILHS 826


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
            Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 144  NQSPRGTDIHISHIQRSSDLEHSASRSIE 230
            +++P  + IH+ HI+R  +L H+ S S+E
Sbjct: 926  DRTPDSSSIHLPHIER-LNLFHTKSESLE 953


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/56 (26%), Positives = 23/56 (41%)
 Frame = +1

Query: 574 GTDVQLFGSIIEFRFHISYPGRSTVEFRDGRSQTSAVGITRGQNIYKLLDSINVLC 741
           GT  ++    +    ++ +  R   E+       S  GI RG     LLDS  +LC
Sbjct: 283 GTSFKVCAGDLNKGVYVRFNKRDNEEYLCTHPSASVGGILRGNLHINLLDSTVILC 338


>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 20  SMSGLLAICRQCAEEAPQLNSPQIIRDVMCG 112
           SM  +  IC +C E+ P L       D +CG
Sbjct: 12  SMLSVKMICSECREDPPNLVEEFSSGDTVCG 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,389,328
Number of Sequences: 5004
Number of extensions: 74132
Number of successful extensions: 217
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)