Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00787
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0585 - 18998013-18998306,18998448-18998630,18999048-189990... 49 4e-06
06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804 29 4.0
01_03_0074 + 12215414-12215603,12216178-12216236,12216605-122167... 29 4.0
10_05_0044 - 8509121-8509191,8509270-8509350,8509452-8509565,850... 28 7.0
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 28 7.0
02_04_0281 + 21563588-21563696,21565053-21565708,21565793-215658... 28 7.0
10_06_0084 - 10477880-10477897,10477940-10478002,10479523-104795... 28 9.3
08_02_0637 + 19571677-19571943,19572036-19572176,19572260-195723... 28 9.3
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093 28 9.3
03_06_0065 - 31399791-31399874,31399956-31400165,31400407-314005... 28 9.3
>10_08_0585 - 18998013-18998306,18998448-18998630,18999048-18999089,
18999226-18999495,18999903-19000454,19000546-19000770,
19001435-19001640,19001738-19001936,19002166-19002381,
19002887-19002991,19003127-19003243,19003366-19003548,
19004292-19004468,19004714-19004816,19005066-19005523
Length = 1109
Score = 49.2 bits (112), Expect = 4e-06
Identities = 26/57 (45%), Positives = 33/57 (57%)
Frame = +3
Query: 312 NSNVVLWLFPGHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLVKHTTQSLYTYL 482
NS + W P + PRFV+LL Y V+ GLV+S G L ESL K +T +L YL
Sbjct: 840 NSADLEWAVPAVSYPRFVKLLQVSCYSKPVLSGLVISTGGLQESLRKASTSALVDYL 896
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 121 QAVEKIDRTRAHAGRIFTSLIYNDPP-ISNIPHHEALKRIFPS 246
QAVEKID+ R A + ++YN+ + +IP+ E L++I P+
Sbjct: 798 QAVEKIDKIREIAVKTLKRILYNEELFVPSIPYRELLEQIIPN 840
>06_02_0341 + 14778915-14778961,14778982-14779860,14780101-14782804
Length = 1209
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 162 TDIHISHIQRSSDLEHSASRSIETHISVRRSELKPHPKDID 284
T I + IQR + + ++ ++TH S+R +KP+P D+D
Sbjct: 609 TGISLEAIQRMIN-DGIKAQYMQTHYSMRPGYVKPYPPDVD 648
>01_03_0074 +
12215414-12215603,12216178-12216236,12216605-12216703,
12216820-12216946,12216989-12217252,12217382-12217503,
12217575-12217646
Length = 310
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -2
Query: 455 VFYQALGQLSGTDNQSFYHTVPVIWIVQ*LNKSRHC 348
+F +A QLS T N + YH+V +I I + K+ C
Sbjct: 51 MFREAFNQLSLTQNLNSYHSVLIIKIQEDYEKNTRC 86
>10_05_0044 -
8509121-8509191,8509270-8509350,8509452-8509565,
8509652-8509702,8510031-8510115
Length = 133
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 84 HKLSET*CVASRTGRREN*PNQSPRGTDIHISHIQRSSDLEHSASRSIETHISVRRSEL 260
HK+ E + S EN N +GTDIH R S E ++ HI R S +
Sbjct: 22 HKMKENAGIISNAESNEN-SNSMTQGTDIHQLQDIRGSLKEPEKDKTETKHIQERSSTI 79
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 111 ASRTGRREN*PNQSPRGTDIHISHIQRSSDLEHSASRSIETHISVRRSE 257
+S+TG EN + G+ + +QR+ L S+ RSIE +++R+E
Sbjct: 258 SSKTGTSENIKTLARFGSKLK-RDVQRTGSLRQSSPRSIEETSNLKRTE 305
>02_04_0281 +
21563588-21563696,21565053-21565708,21565793-21565879,
21566487-21567461,21567640-21567786
Length = 657
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = +3
Query: 150 SPRGTDIHISHIQRSSDLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENS 317
S G+ H+S + +S L+H+A + + RS P D DE + S N+
Sbjct: 479 SSDGSQRHLSDNENNSSLDHTADGVSQNLLVESRSISSSEPSDRGDEFRVFLSNNT 534
>10_06_0084 -
10477880-10477897,10477940-10478002,10479523-10479575,
10479774-10480589,10480889-10480998,10481338-10482068
Length = 596
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 556 ACETHNGTDVQLFGSIIEFRFHISYPGRSTVEFRDGR 666
AC H+ T V++FG + + ++Y + F+DG+
Sbjct: 496 ACAGHSSTAVRIFGLLTTDKNVVTYTALMSAYFQDGK 532
>08_02_0637 +
19571677-19571943,19572036-19572176,19572260-19572331,
19572425-19572523,19572615-19572668,19572804-19572905,
19573169-19573246,19573449-19573518,19573644-19573807,
19574629-19574694
Length = 370
Score = 27.9 bits (59), Expect = 9.3
Identities = 9/20 (45%), Positives = 16/20 (80%)
Frame = +2
Query: 614 GSISPILEDPQSSFAMDVLK 673
G++SPI++DP S+F D ++
Sbjct: 119 GTLSPIVDDPDSAFMSDTMR 138
>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
Length = 1040
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 688 FQLQMFENVHRETRLWIFQDR-RYGT*TQ*SIQKVEHRSRYAFHMQIIGKNFDDR 527
F L +++ LW F+ R R T Q +QK + FH +I G F D+
Sbjct: 151 FGLPLYQLYKGNKILWTFRGRFRLSTKIQDKVQKADVFLAAEFHNKIYGMEFQDQ 205
>03_06_0065 -
31399791-31399874,31399956-31400165,31400407-31400526,
31401166-31401225,31401670-31401879,31402512-31402587,
31403010-31403173,31403254-31403316,31403640-31403727,
31403810-31404460,31405102-31405149,31405334-31405902
Length = 780
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = +3
Query: 273 KDIDDEKDLLTS-ENSNVVLWLFPGHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLV 449
K ++ E L+ ++ N+V + + RF L Y + S+ K + G +TES++
Sbjct: 448 KQLEQEIKFLSQFKHENIVQYYGSEYIEDRFYIYLEYV-HPGSINKYVNQHCGAMTESVI 506
Query: 450 KHTTQSLYTYLNTLHSDK 503
+ T+ + L LHS K
Sbjct: 507 RSFTRHILKGLAFLHSQK 524
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,010,639
Number of Sequences: 37544
Number of extensions: 475022
Number of successful extensions: 1353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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