Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00787
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36321| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.44 
SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)                  31   1.3  
SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.1  
SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)               28   7.2  
SB_40637| Best HMM Match : IP_trans (HMM E-Value=4)                    28   7.2  
SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  

>SB_36321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 171 HISHIQRSSDLEHSASRSIETHISVRRSELKPHPKDIDDEKDL 299
           H+ +++R  DLE  ASR +E    +R  +++   +D + E+DL
Sbjct: 55  HLRYLERDRDLERLASRDLEVDRDLRDRDVERDLRDREVERDL 97


>SB_22570| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 601

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 198 DLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSE 311
           +L+ +  + IE   SV+  + K H  D+++EKD L +E
Sbjct: 306 ELKMAQLKEIENEYSVKADQYKQHIADLEEEKDQLQNE 343


>SB_31142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 745

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 228 ETHISVRRSELKPHPKDIDDEKDLLTSENSNVVLWLFPGHTMPRFVQLLN 377
           +T ++V RSEL     D +D+   L +E  NV+  +    ++ R +QLL+
Sbjct: 230 QTTVAVIRSELAQLKNDYEDQSSQLEAEKRNVMECVQEQESLTRQLQLLH 279


>SB_17752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 513

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +3

Query: 219 RSIETHISVRRSELKPHPKDIDDEKDLLTSE 311
           + IE   SV+  + K H  D+++EKD L +E
Sbjct: 4   KEIENEYSVKADQYKQHIADLEEEKDQLQNE 34


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -1

Query: 678 RCLRTSIAKLDCGSSRIGDMEPELNNRSKKLNIGPVMRFTCKL 550
           RC R S+  +D    +   ++ + N+ SKK+++  + R    L
Sbjct: 118 RCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMNDIKRLEAAL 160


>SB_20358| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1323

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +3

Query: 141  PNQSPRGTDIHISHIQRSSDLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENS 317
            P+ SP+    +I  I R SD + ++  SI+   S R SE  P P          +S+NS
Sbjct: 1008 PSTSPQPARRNIPIIVRPSDGDSNSEPSIDKQDSSRGSEPPPSPLSSQPSPKRWSSQNS 1066


>SB_51318| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3.2)
          Length = 847

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = -3

Query: 598 IQKVEHRSRYAFHMQIIGKNFDDRLANRL*I---SLSECSVFRY---VYRDCVVCFTKLS 437
           ++ +EHR      +Q  G   D RLA R+ +   + S  +V++Y    Y  C  CF   +
Sbjct: 610 LKYIEHREGEGVFIQHAGNRGDVRLAGRIKVDGYAESTNTVYQYHGCFYHGCTTCFQPHT 669

Query: 436 VSSPALTT 413
           V+    TT
Sbjct: 670 VNPLTNTT 677


>SB_40637| Best HMM Match : IP_trans (HMM E-Value=4)
          Length = 173

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 105 CVASRTGRREN*PNQSPRGTDIHISHIQRSSDLEHSASR 221
           C++ R    E   +  PRG+ +HI  +  SS   H  SR
Sbjct: 80  CLSDRESDHEGFASNKPRGSVVHIPPLNFSSGENHEDSR 118


>SB_6243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 166 IFTSLIYNDPPISNIPHHEALKRIFPSEEV 255
           +F  L+YN   ++N P HE LK +  +EEV
Sbjct: 336 VFDVLLYNGKKLANTPLHERLK-LLETEEV 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,764,845
Number of Sequences: 59808
Number of extensions: 565452
Number of successful extensions: 1902
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1902
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)