Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00787
(759 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical p... 31 1.2
AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like... 31 1.2
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical... 29 2.7
AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear recep... 29 4.7
AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear horm... 29 4.7
AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical... 28 6.3
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 28 8.3
Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 28 8.3
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 28 8.3
AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical ... 28 8.3
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 28 8.3
AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily a... 28 8.3
AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a... 28 8.3
AC006809-1|AAK71409.1| 391|Caenorhabditis elegans Hypothetical ... 28 8.3
>Z78018-7|CAB01449.2| 2577|Caenorhabditis elegans Hypothetical protein
F15B9.7 protein.
Length = 2577
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 362 CSVIELSRLQVQCDKRTG-CQCRRA 433
CS + + QCDK+TG CQC+++
Sbjct: 1811 CSCAQTKDYEAQCDKKTGACQCKKS 1835
>Z78013-10|CAB01427.2| 2577|Caenorhabditis elegans Hypothetical
protein F15B9.7 protein.
Length = 2577
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 362 CSVIELSRLQVQCDKRTG-CQCRRA 433
CS + + QCDK+TG CQC+++
Sbjct: 1811 CSCAQTKDYEAQCDKKTGACQCKKS 1835
>AY314773-1|AAQ84880.1| 2596|Caenorhabditis elegans flamingo-like
protein FMI-1 protein.
Length = 2596
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 362 CSVIELSRLQVQCDKRTG-CQCRRA 433
CS + + QCDK+TG CQC+++
Sbjct: 1830 CSCAQTKDYEAQCDKKTGACQCKKS 1854
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 642 HSRVSRWTFSNICSWNYE-GAKYIQAARFHKCP 737
H VS W N+ + N+ GA + A +FH+CP
Sbjct: 656 HQAVSNWNAKNV-NLNFRFGAHNVMAEKFHECP 687
>Z81486-9|CAB03991.1| 430|Caenorhabditis elegans Hypothetical
protein C53A5.11 protein.
Length = 430
Score = 29.5 bits (63), Expect = 2.7
Identities = 27/117 (23%), Positives = 53/117 (45%)
Frame = +3
Query: 159 GTDIHISHIQRSSDLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENSNVVLWLF 338
G + +HI S+ + + S + S +SE HPK I + ++ + N++
Sbjct: 45 GVEKMTNHIFSDSESDRESGASEFDYHSDSQSEETQHPKAI-EMRNQFRNTTENLI---- 99
Query: 339 PGHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLVKHTTQSLYTYLNTLHSDKEI 509
T+ F +L++ Y + ++T SL++ L Y+NTL+S ++I
Sbjct: 100 --QTLQMFFGILSFELYEGKDNLKCITMIHDIT-SLMEVADTKLKNYINTLNSKEQI 153
>AC024859-24|ABD63210.1| 483|Caenorhabditis elegans Hypothetical
protein Y71H2AM.3 protein.
Length = 483
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/38 (34%), Positives = 25/38 (65%)
Frame = +3
Query: 213 ASRSIETHISVRRSELKPHPKDIDDEKDLLTSENSNVV 326
AS + H +V+R ELK +PK + +EK ++ S ++++
Sbjct: 245 ASCDPDRHKNVKREELKANPKWLPNEKKVMISYANSII 282
>AY305846-1|AAR11990.1| 404|Caenorhabditis elegans nuclear receptor
NHR-126 protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 497 GQGNLKSICETIIKVFADNLH---VKRITGPMFNFLDRLLSSGSISPILE 637
GQG + + E +++ ADNLH V+++ P N+ RL I+ +LE
Sbjct: 325 GQGKVMEVAEMLLEAQADNLHKYYVEKLKMP--NYSSRLSQLMKINRLLE 372
>AF016438-11|AAK84530.2| 404|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 126 protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +2
Query: 497 GQGNLKSICETIIKVFADNLH---VKRITGPMFNFLDRLLSSGSISPILE 637
GQG + + E +++ ADNLH V+++ P N+ RL I+ +LE
Sbjct: 325 GQGKVMEVAEMLLEAQADNLHKYYVEKLKMP--NYSSRLSQLMKINRLLE 372
>AL132904-13|CAC35846.4| 778|Caenorhabditis elegans Hypothetical
protein Y111B2A.17 protein.
Length = 778
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 279 IDDEKDLLTSENSNVVLWL-FPGHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLV 449
IDDE + S + V++W G T P+ L+ P + + V+ AG T L+
Sbjct: 667 IDDEHFVTASRDQKVIVWAESAGQTAPKATVKLDEPVTAIAAVSKDVIVAGLQTGELI 724
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>Z93398-4|CAH04743.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 3484 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 3511
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>Z92788-4|CAH04711.1| 4410|Caenorhabditis elegans Hypothetical protein
ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 3484 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 3511
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 438 ESLVKHTTQSLYTYLNTLHSDK 503
E + HT Q+LY+Y+N +S K
Sbjct: 192 EVTIHHTAQTLYSYINVSYSSK 213
>Z48544-4|CAA88443.3| 250|Caenorhabditis elegans Hypothetical
protein ZK945.5 protein.
Length = 250
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +1
Query: 199 ISNIPHHEALKRIFPSEEVS*SRILKILTMKKIC*QAKTQTWCSGCSPDTQCLDLFSY 372
IS + HHE P + + + ++ M+ C + + + CS C D +C D F +
Sbjct: 136 ISTLAHHEKKMISTPDCQFHPGKSISLVCMRDRCKKRQNRLMCSECFLD-KCSDHFEH 192
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>AL031637-2|CAH04759.1| 4410|Caenorhabditis elegans Hypothetical
protein ZK1151.1g protein.
Length = 4410
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 3484 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 3511
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 198 DLEHSASRSIETHISVRRSELKPHPKDID 284
D+EH+AS +E H+ LK P+D D
Sbjct: 4029 DVEHNAS-PLEAHLHATEQHLKEEPQDAD 4056
>AF077534-2|AAC26284.1| 648|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform b protein.
Length = 648
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 264 ASAHFFGRKYAFQCFVMRNVRDRR 193
A+++ GR + F C +MRN RD++
Sbjct: 470 ATSNLVGRPHLFLCTLMRNARDKQ 493
>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
assigned gene nameprotein 218, isoform a protein.
Length = 1136
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 264 ASAHFFGRKYAFQCFVMRNVRDRR 193
A+++ GR + F C +MRN RD++
Sbjct: 958 ATSNLVGRPHLFLCTLMRNARDKQ 981
>AC006809-1|AAK71409.1| 391|Caenorhabditis elegans Hypothetical
protein Y5H2A.2 protein.
Length = 391
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 473 YVSEHAAFGQGNLKSICETIIKVFADNLHVKRITG-PMFNFLDRLLSSGSISPILE 637
Y S+H G+GN I E + ++ AD+LH M ++ DR+L ++ +L+
Sbjct: 304 YASKHFP-GEGNKLEIAEHLQQLIADDLHAYYTEELNMTSYSDRILKMMKVNNMLQ 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,971,291
Number of Sequences: 27780
Number of extensions: 420498
Number of successful extensions: 1236
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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