Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00787
         (759 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   4.1  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.5  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 428 RADRELGKTHNAISIYVSEHAAFGQGNLKSI-CETIIKVFADNLHVKRITGPM 583
           R +RE  K H  IS  +S +  +   N K + C    K++ +  ++++I  P+
Sbjct: 70  RKEREKSKEHKIIS-SLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPV 121


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 428 RADRELGKTHNAISIYVSEHAAFGQGNLKSI-CETIIKVFADNLHVKRITGPM 583
           R +RE  K H  IS  +S +  +   N K + C    K++ +  ++++I  P+
Sbjct: 70  RKEREKSKEHKIIS-SLSNNYNYNNNNYKKLYCNNYKKLYYNINYIEQIPIPV 121


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +2

Query: 428 RADRELGKTHNAISIYVSEHAAFGQGNLKSI-CETIIKVFADNLHVKRITGPM 583
           R +RE  K H  IS  +S +  +   N K + C    K++ +  ++++I  P+
Sbjct: 70  RKEREKSKEHKIIS-SLSNNYNYNNNNYKKLYCNNYRKLYYNINYIEQIPIPV 121


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 249 RSELKPHPKDIDDEKDLLTSENSNVVLWLFPGHTMPRFVQL 371
           R++ K   K+ DD+K +++S++ +     FPG T    ++L
Sbjct: 333 RAKKKSKKKESDDKK-VISSKSGSKANSPFPGSTEADIIEL 372


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 273 KDIDDEKDLLTSENSNVVLWLFPGHT 350
           KD++D       +N  V+L L P HT
Sbjct: 98  KDLEDLTAEAKKQNLKVILDLVPNHT 123


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 194 GSLYMRDVNIRPAWALVRSIFSTACARRHTSR 99
           GS++ RDVN+R   A+V   + T   + +  R
Sbjct: 88  GSVHSRDVNVR---AVVAQYYDTDVNKEYAIR 116


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 571 YAFHMQIIGKNFDDRLANRL 512
           Y  H QI+ +   +RL NRL
Sbjct: 235 YYMHQQIMARYNCERLCNRL 254


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,699
Number of Sequences: 438
Number of extensions: 5904
Number of successful extensions: 31
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)