Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00787
         (759 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60740.1 68416.m06795 tubulin folding cofactor D identical to...    48   7e-06
At3g31950.1 68416.m04046 hypothetical protein                          31   0.63 
At5g66850.1 68418.m08428 protein kinase family protein contains ...    30   1.5  
At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1...    29   4.4  
At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing ...    28   5.9  
At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28 ...    28   5.9  
At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondr...    28   7.7  

>At3g60740.1 68416.m06795 tubulin folding cofactor D identical to
            tubulin folding cofactor D GI:20514263 from [Arabidopsis
            thaliana]
          Length = 1254

 Score = 48.0 bits (109), Expect = 7e-06
 Identities = 29/100 (29%), Positives = 53/100 (53%)
 Frame = +3

Query: 183  IQRSSDLEHSASRSIETHISVRRSELKPHPKDIDDEKDLLTSENSNVVLWLFPGHTMPRF 362
            +++   L  +A++ ++  I   +S   PH    +  +++L ++ +  + W  P  + PRF
Sbjct: 944  VEKMDKLRETAAKVLQ-RILYHKSVSVPHVPYREKLEEILPNKAN--LQWAVPAFSFPRF 1000

Query: 363  VQLLNYPDYRYSVIKGLVVSAGELTESLVKHTTQSLYTYL 482
            VQLL    Y   V+ GLV+S G L +SL K +  +L  Y+
Sbjct: 1001 VQLLKLRCYSKEVMSGLVISIGGLQDSLRKASLVALLEYM 1040


>At3g31950.1 68416.m04046 hypothetical protein
          Length = 507

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +3

Query: 216 SRSIETHISVRRSELKPHPKDIDDEKDLLTSENSNVVLWL 335
           S S E+ +S+  S+    P++ DD  DLL+SE +N V W+
Sbjct: 5   SESTESTMSIE-SDPSECPENADDHDDLLSSEEANHVEWM 43


>At5g66850.1 68418.m08428 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain; identical
           to cDNA MAP3K gamma protein kinase GI:2315152
          Length = 716

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
 Frame = +3

Query: 273 KDIDDEKDLLTS-ENSNVVLWLFPGHTMPRFVQLLNYPDYRYSVIKGLVVSAGELTESLV 449
           K ++ E  LL++ ++ N+V +        RF   L Y  +  S+ K +    G +TES+V
Sbjct: 391 KQLEQEIKLLSNLQHPNIVQYFGSETVEDRFFIYLEYV-HPGSINKYIRDHCGTMTESVV 449

Query: 450 KHTTQSLYTYLNTLHSDKEI 509
           ++ T+ + + L  LH+ K +
Sbjct: 450 RNFTRHILSGLAYLHNKKTV 469


>At5g48410.1 68418.m05986 glutamate receptor family protein (GLR1.3)
           plant glutamate receptor family, PMID:11379626
          Length = 860

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +3

Query: 390 RYSVIKGLVVSAGELTESLVKHTTQSLYTYLNTLHSDKEI*SLFARRSSKFLPIICM*NA 569
           R  +  GLV+  G L   +VK++     +Y   +H+D +     + R+S   P++ + +A
Sbjct: 39  RVQIRVGLVLDLGSLKGKIVKNSVSMALSYFYAIHNDYKTRVSVSLRNSHGEPLLALASA 98


>At3g23900.1 68416.m03003 RNA recognition motif (RRM)-containing
           protein 
          Length = 987

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = +3

Query: 117 RTGRREN*PN-QSPRGTDIH----ISHIQRSSDLEHSASRSIETHISVRRSELKPHPK 275
           R+GRR   P+ +  +G DI      S  ++S    HS SRSIE   S R    K H +
Sbjct: 816 RSGRRSRSPSSEGKQGRDIRSSPGYSDEKKSRHKRHSRSRSIEKKNSSRDKRSKRHER 873


>At3g06530.1 68416.m00757 BAP28-related similar to Protein BAP28
            (Swiss-Prot:Q9H583) [Homo sapiens]
          Length = 1830

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = +2

Query: 464  ISIYVSEHAAFGQGNLKSICETIIKVFADNLHVKRITGPMFNFLDRLLSSGSISPILEDP 643
            I +   E+ +    NLKS    I ++  D + V+    P+    +  +SSG+ S ++   
Sbjct: 1452 IMVLHPEYVSDFDKNLKSKANAIRRLLTDKIPVRLTLQPLLRIYNEAVSSGNASLVIAFN 1511

Query: 644  QSSFAMDVLKHLQLELRGGKIYTSC 718
                 +  +    +    GKI+  C
Sbjct: 1512 MLEDLVVKMDRSSIVSSHGKIFDQC 1536


>At1g68990.1 68414.m07895 DNA-directed RNA polymerase, mitochondrial
           (RPOMT) identical to SP|P92969 DNA-directed RNA
           polymerase, mitochondrial precursor (EC 2.7.7.6)
           {Arabidopsis thaliana}
          Length = 976

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = +1

Query: 37  RDMSTVCRRSPAVELSTNYQRRDV-----WR-RAQAVEKIDRTRAHAGRIFTSLIYNDPP 198
           +   TV +R+P  +L   Y+  D      W+   + +  +DR  A+ GRI   +   D P
Sbjct: 436 KQQRTVMKRTPKEQLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGGRIGGLVDREDVP 495

Query: 199 ISNIPHHE 222
           I   P  E
Sbjct: 496 IPEEPERE 503


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,723,288
Number of Sequences: 28952
Number of extensions: 385146
Number of successful extensions: 1152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1692519896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)