Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00786
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   124   2e-29
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    42   6e-05
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    37   0.002
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    26   5.9  
SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr 3|||Ma...    25   7.8  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  124 bits (298), Expect = 2e-29
 Identities = 71/188 (37%), Positives = 101/188 (53%), Gaps = 5/188 (2%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCPLR----STNLP 300
           NPLF  RP++F IGQ IQP RDLSRFV+WP+YIR+QR++ + ++  K P         L 
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 301 RHWTRLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSP 480
           ++      +  +++   T                       +S   + P           
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVS---KKPYNVKYGLNHVV 140

Query: 481 SWSRRRRRTLVI-AHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLAL 657
           +    ++  LV+ A DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   LA+
Sbjct: 141 ALIEAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAV 200

Query: 658 TNVESGDR 681
           T V   D+
Sbjct: 201 TEVREEDK 208



 Score = 58.4 bits (135), Expect = 9e-10
 Identities = 34/84 (40%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET-XXXXXXXXXXXXXXXXXXXXXX 431
           L  RLKVPP I QF +TLDK TA  +FK+L KYRPET                       
Sbjct: 65  LNLRLKVPPAIAQFQKTLDKNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQD 124

Query: 432 XXXRPNTIRSGTNTVTKLVEKKKA 503
              +P  ++ G N V  L+E KKA
Sbjct: 125 VSKKPYNVKYGLNHVVALIEAKKA 148


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 618
           +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 51  IVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESGDRAS 687
           +++A D+ P++++  +P LC    VPY     K  LG   + K  T   +  V  G +  
Sbjct: 73  VILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKKD 131

Query: 688 FSK 696
            SK
Sbjct: 132 MSK 134


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -1

Query: 474  LCLCRIGWC 448
            LCLC IGWC
Sbjct: 2326 LCLCYIGWC 2334


>SPCC24B10.15 |||PINc domain|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = -2

Query: 428 LIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCLGKLVDRRGHFQTTL 258
           L F   L  +S  Q  FP  FS     L+NL   +  ++ Q L    + R    +T+
Sbjct: 197 LSFSKGLEAASIVQTSFPSAFSSNSENLENLSMDIDLTVSQPLATATNHRNQGASTV 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,658,270
Number of Sequences: 5004
Number of extensions: 51154
Number of successful extensions: 160
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)