Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00786
(696 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 134 6e-32
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 100 2e-21
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 93 3e-19
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 42 5e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 41 8e-04
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 39 0.003
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 38 0.006
11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600 29 3.5
02_04_0587 + 24110333-24110584,24111193-24111261,24112347-241128... 28 6.2
01_01_0697 - 5389071-5389487,5390301-5390390,5390472-5390536,539... 28 8.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 134 bits (324), Expect = 6e-32
Identities = 77/190 (40%), Positives = 100/190 (52%), Gaps = 2/190 (1%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWT 312
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ + K P R
Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81
Query: 313 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWS 489
+ L F + ++ + P
Sbjct: 82 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 139
Query: 490 RRRRRTLV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 666
+ + LV IAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + L LT V
Sbjct: 140 EQSKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTV 199
Query: 667 ESGDRASFSK 696
++ D+ FSK
Sbjct: 200 KNEDKLEFSK 209
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 63 LKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVE 121
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
+P ++ G N VT L+E+ KA
Sbjct: 122 AKKPIVVKYGLNHVTYLIEQSKA 144
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 99.5 bits (237), Expect = 2e-21
Identities = 43/67 (64%), Positives = 57/67 (85%)
Frame = +1
Query: 496 RRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVESG 675
+ + +VIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + L LT V++
Sbjct: 128 KAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNE 187
Query: 676 DRASFSK 696
D+ FSK
Sbjct: 188 DKLEFSK 194
Score = 67.3 bits (157), Expect = 1e-11
Identities = 30/49 (61%), Positives = 34/49 (69%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKRPK F IG + P +DL RFVRWPK +RIQRQ+ V K P
Sbjct: 23 NPLFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVP 71
Score = 38.3 bits (85), Expect = 0.006
Identities = 17/36 (47%), Positives = 26/36 (72%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPE 362
L++RLKVPP +NQFT+TLDK ++L++ + E
Sbjct: 64 LKQRLKVPPALNQFTRTLDKNLGCQKERLLKRAQAE 99
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 92.7 bits (220), Expect = 3e-19
Identities = 65/190 (34%), Positives = 86/190 (45%), Gaps = 2/190 (1%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWT 312
NPLFEKRPK F IG + P +DL RFV+WPK +RIQRQ+ + K P R
Sbjct: 6 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 65
Query: 313 R-LQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWS 489
+ L F + ++ + P
Sbjct: 66 KNLATNLFKMLLK--YRPEDKAAKKERLLKRAQAEAEGKTVEAKKPIVVKYGLNHVTYLI 123
Query: 490 RRRRRTLV-IAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNV 666
+ + LV IAHDVDPIELV++LPALCRKM +VH+KT + L LT V
Sbjct: 124 EQSKAQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTV 169
Query: 667 ESGDRASFSK 696
++ D+ FSK
Sbjct: 170 KNEDKLEFSK 179
Score = 60.9 bits (141), Expect = 9e-10
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 47 LKQRLKVPPALNQFTRTLDKNLATNLFKMLLKYRPE-DKAAKKERLLKRAQAEAEGKTVE 105
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
+P ++ G N VT L+E+ KA
Sbjct: 106 AKKPIVVKYGLNHVTYLIEQSKA 128
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 41.9 bits (94), Expect = 5e-04
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 663
R ++ +IA ++ PI+++ +P LC + +PY V K L R TC L LT
Sbjct: 58 RGQKGLCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTK 117
Query: 664 VESGD 678
G+
Sbjct: 118 PAKGE 122
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 41.1 bits (92), Expect = 8e-04
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 663
R + VIA ++ PI+++ +P LC + +PY V K L R TC L +T
Sbjct: 58 RGNKGLCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTK 117
Query: 664 VESGD 678
G+
Sbjct: 118 PAKGE 122
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVESGDR 681
+V+A D +P+E++L LP L VPY V K LG V R C +N S R
Sbjct: 52 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASNLR 111
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTN 663
+V+A D +P+E++L LP L VPY V K LG V R C +N
Sbjct: 54 VVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSN 107
>11_06_0523 - 24570683-24571126,24571210-24571808,24573300-24573600
Length = 447
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 219 AQVYPHPAPEGCLQRRLKVPPPINQFTQTLDKTTA 323
AQ++ P+P+ L RL+ PPP ++ D+ TA
Sbjct: 101 AQLHNEPSPDDNLPSRLRRPPPPPRWMPATDEGTA 135
>02_04_0587 +
24110333-24110584,24111193-24111261,24112347-24112850,
24113094-24113336
Length = 355
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/31 (48%), Positives = 17/31 (54%)
Frame = -3
Query: 178 PDQWQSSLASSRREDSRSSWAQPF*PPMGRR 86
P SSLA +RR +R AQP PP RR
Sbjct: 24 PSSAASSLAFARRAAARPLRAQPLLPPAARR 54
>01_01_0697 -
5389071-5389487,5390301-5390390,5390472-5390536,
5391106-5391176,5391297-5391335,5392938-5393350
Length = 364
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 325 LAVVLSSV--WVNWLIGGGTFRRR*RQPSGAG 236
LAV L S+ WV L+GGG +RRR R +G G
Sbjct: 37 LAVALHSLLLWVFLLVGGGGWRRR-RGDAGEG 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,395,993
Number of Sequences: 37544
Number of extensions: 424916
Number of successful extensions: 1452
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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