Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00786
(696 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 134 5e-32
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 93 3e-19
SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27) 44 1e-04
SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15) 33 0.22
SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32) 29 3.6
SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09) 29 4.8
SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74) 28 6.3
SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05) 28 6.3
SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16) 28 6.3
SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 8.3
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 134 bits (325), Expect = 5e-32
Identities = 75/188 (39%), Positives = 96/188 (51%), Gaps = 1/188 (0%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWT 312
NPL EKRP+NF IG IQP RDLSRFVRWP+Y+++QRQK++ K P +
Sbjct: 29 NPLIEKRPRNFGIGGDIQPKRDLSRFVRWPRYVKLQRQKSLLYQRLKVPPAINQFTQALD 88
Query: 313 RLQLRAFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWSR 492
R + + P S
Sbjct: 89 RQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVE 148
Query: 493 RRRRTL-VIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
++ L VIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 149 NKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVR 208
Query: 670 SGDRASFS 693
D+ S +
Sbjct: 209 QEDKNSLN 216
Score = 67.3 bits (157), Expect = 1e-11
Identities = 35/83 (42%), Positives = 43/83 (51%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L +RLKVPP INQFTQ LD+ + LFK+L KYRPET
Sbjct: 70 LYQRLKVPPAINQFTQALDRQSTVQLFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAP 129
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
+P ++ G N +T LVE KKA
Sbjct: 130 GKKPMLVKYGINHITSLVENKKA 152
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 92.7 bits (220), Expect = 3e-19
Identities = 40/67 (59%), Positives = 53/67 (79%)
Frame = +1
Query: 493 RRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 672
++ + +VIAHDVDPIE+V++LPALCRKM VPYCIVKGK+RLG +VH+K T L +T V
Sbjct: 59 KKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGKVVHKKNATALCITGVRQ 118
Query: 673 GDRASFS 693
D+ S +
Sbjct: 119 EDKNSLN 125
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +3
Query: 330 LFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXXXXRPNTIRSGTNTVTKLVEKKKA 503
LFK+L KYRPET +P ++ G N +T LVE KKA
Sbjct: 4 LFKLLHKYRPETKAEKKARLSAKAEKKAEGKEEAPGKKPMLVKYGINHITSLVENKKA 61
>SB_38307| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=1.6e-27)
Length = 187
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTN 663
+V+A D +P+E++L LP LC VPY V+ K+ LG V R C N
Sbjct: 113 IVMAADTEPLEILLHLPLLCEDKNVPYVFVRSKAALGRATGVTRPVIACAVTVN 166
>SB_235| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=3.9e-15)
Length = 544
Score = 33.1 bits (72), Expect = 0.22
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGK 606
+++A DV PI+++ +P +C +PY V K
Sbjct: 118 VILAGDVSPIDVISHIPVMCEDSKIPYAYVPSK 150
>SB_45990| Best HMM Match : 7tm_1 (HMM E-Value=2.5e-32)
Length = 325
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 437 KEAQHHPIRHKHSHQAGREEEGALWSSLMM-LIPLSWFSSCQRYAVK 574
+ Q H + S Q R+ G S+++ L +SWF SC Y +K
Sbjct: 207 RRIQTHNTNSRQSSQDKRQRSGTRTISIVIGLFVISWFPSCVYYFLK 253
>SB_45328| Best HMM Match : DUF1162 (HMM E-Value=6.1e-09)
Length = 1508
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = -3
Query: 652 LSMCMSCGVQVHRGGTCP*--QCSMVRPFYGITLAGREPAQW 533
L C+ C +Q H G + MVRP+ G EPA W
Sbjct: 1187 LLACLFCRLQSHEDGVTVDFSRMKMVRPYEGAIRRSFEPAMW 1228
>SB_38146| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 473 SHQAGRE-EEGALWSSLMMLIPLSWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAH 646
SH+A E A SL+ + ++ + W+Y AL+ SPA+V++ ++ H
Sbjct: 49 SHEATEELARQAEKMSLLQVAKIALMFCILWFLATWSYQEALNDTSPAAVNILSSSSGH 107
>SB_21511| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.74)
Length = 437
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 695 FEKEARSPDSTFVRAKHVHVLRCTSAPRRDLPLT 594
F + +S R +H H+ RCTSAP P T
Sbjct: 61 FNNFTNTTESWPQRKRHFHLRRCTSAPEPSSPNT 94
>SB_48160| Best HMM Match : Cytochrom_C (HMM E-Value=1.8e-05)
Length = 212
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 443 PLWWRLIFLGNLSFSSFPQPLFPG 372
P WW ++F+G + FS L+PG
Sbjct: 56 PKWWFMLFIGTIVFSIGYLVLYPG 79
>SB_23424| Best HMM Match : Ank (HMM E-Value=1.1e-16)
Length = 494
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 424 MSLHQRGPTPSDPAQTQSPSWSRRRRRTLVIAHDVDPIELVLFLPALCRKMGVP 585
MSL G PS+PA+ + P S R R++ + ++ P P L +K G P
Sbjct: 212 MSLPFSGTLPSEPARVEQPPSSARSRKSGNLYDELRPYT----APELPKKSGKP 261
>SB_46122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 743
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 436 QRGPTPSDPAQTQSPSWSRRRRRTLVIAHDVDPIE 540
+RG P DP+Q S R+R+ + V +VD E
Sbjct: 238 RRGRKPKDPSQKLKKSPWRKRKDSFVFTDEVDSTE 272
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 539 SWFSSCQRYAVKWAYHTALSRASPASVHLYTARHAHA*L*QMWSL 673
+WF V+W YH + +S S+++YT L ++WS+
Sbjct: 2891 TWFKPSSTCRVRWFYH--MMGSSMGSLNVYTRTSMSGPLSRVWSV 2933
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,090,018
Number of Sequences: 59808
Number of extensions: 422903
Number of successful extensions: 1262
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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