Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00786
(696 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 130 9e-31
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 83 2e-16
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 73 3e-13
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 73 3e-13
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 36 0.028
AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine re... 36 0.028
U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonin... 31 1.0
U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase ... 31 1.0
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 28 7.3
D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine recep... 27 9.7
AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical ... 27 9.7
AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical ... 27 9.7
AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical ... 27 9.7
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 130 bits (314), Expect = 9e-31
Identities = 73/189 (38%), Positives = 99/189 (52%), Gaps = 1/189 (0%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWT 312
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 313 RLQLR-AFSRFWRNTXXXXXXXXXXXXXXXXXXXXXXXMSLHQRGPTPSDPAQTQSPSWS 489
R AF + + +R T T +
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
RR + ++IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVN 209
Query: 670 SGDRASFSK 696
D+++ +K
Sbjct: 210 PEDKSALNK 218
Score = 74.5 bits (175), Expect = 6e-14
Identities = 36/83 (43%), Positives = 47/83 (56%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEV 130
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
RPNT+R G NT+T+LVE ++A
Sbjct: 131 TKRPNTVRHGVNTITRLVETRRA 153
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 82.6 bits (195), Expect = 2e-16
Identities = 36/68 (52%), Positives = 51/68 (75%)
Frame = +1
Query: 493 RRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVES 672
RR + ++IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +AL +V
Sbjct: 131 RRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNP 190
Query: 673 GDRASFSK 696
D+++ +K
Sbjct: 191 EDKSALNK 198
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 78
Score = 62.9 bits (146), Expect = 2e-10
Identities = 36/83 (43%), Positives = 47/83 (56%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 71 LQKRLKVPPTINQFRTALDSQSARQAFKLLDKYRPES--------------------TEV 110
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
RPNT+R G NT+T+LVE ++A
Sbjct: 111 TKRPNTVRHGVNTITRLVETRRA 133
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 32.7 bits (71), Expect = 0.26
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLD 311
LQ+RLKVPP INQF LD
Sbjct: 174 LQKRLKVPPTINQFRTALD 192
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 72.5 bits (170), Expect = 3e-13
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFEKR +NF IGQ IQP +D++RFV+WPKYIR+QRQ A+ K P
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVP 181
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPET 365
LQ+RLKVPP INQF LD +A+ FK+L+KYRPE+
Sbjct: 174 LQKRLKVPPTINQFRTALDSHSARQAFKLLDKYRPES 210
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 42.7 bits (96), Expect = 2e-04
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 618
+V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 54 IVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 35.9 bits (79), Expect = 0.028
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRK 636
R + ++A +V PI++ +P +C + +PY + + +LG A+ HR+
Sbjct: 82 RNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR 131
>AF016444-5|AAB65932.1| 330|Caenorhabditis elegans Serpentine
receptor, class ab (class a-like) protein 6 protein.
Length = 330
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
Frame = -2
Query: 407 SFSSFP--QPLFPGCFSLRPVFLQNLEKA-LSCSLVQCLGKLV 288
SF SFP QP+ C +++P F+ N+EKA + C ++Q G+++
Sbjct: 163 SFLSFPFSQPVMNYCTAVKPGFVTNIEKAFIGCLIIQIGGRII 205
>U32275-1|AAA75370.1| 982|Caenorhabditis elegans serine-threonine
kinase protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 445 PTPSDPAQTQSPSWSRRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 624
P+PS+P T P+ L AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 625 VHRKTCT 645
+ K T
Sbjct: 508 QNHKFAT 514
>U11280-5|AAA19437.1| 982|Caenorhabditis elegans Protein kinase
protein 18, isoforma protein.
Length = 982
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/67 (29%), Positives = 32/67 (47%)
Frame = +1
Query: 445 PTPSDPAQTQSPSWSRRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL 624
P+PS+P T P+ L AHD DP++ + P + + +P+ V K R+ L
Sbjct: 453 PSPSEPIPTSQPTSKSESSSILETAHD-DPLDTSIRAPV--KDLHMPHRAV--KERIATL 507
Query: 625 VHRKTCT 645
+ K T
Sbjct: 508 QNHKFAT 514
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +1
Query: 280 LRSTNLPRHWTRLQLRA 330
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
>D45899-1|BAA08309.1| 5071|Caenorhabditis elegans ryanodine receptor
protein.
Length = 5071
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 217 WPKYIRIQRQKAVFSVV*KCPLRSTNLPRHWTRLQLRAFSRFW 345
W K + +QR++ S++ L T L R L AFSR W
Sbjct: 3722 WKKVLTLQRKRMAISLITASHLYKTELHR-GINFFLPAFSRLW 3763
>AF040660-8|AAN65288.1| 594|Caenorhabditis elegans Hypothetical
protein W05G11.6d protein.
Length = 594
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
>AF040660-6|AAN65286.1| 541|Caenorhabditis elegans Hypothetical
protein W05G11.6b protein.
Length = 541
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 8 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 49
>AF040660-5|AAC71149.1| 651|Caenorhabditis elegans Hypothetical
protein W05G11.6a protein.
Length = 651
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 476 DCVCAGSDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFL 345
D VC DGV P+ + ++ F FPGC + RP+++
Sbjct: 118 DSVCHTPDGVRPIMGQ--WMSEEQFGVELDSRFPGCMAGRPMYV 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,234,911
Number of Sequences: 27780
Number of extensions: 310116
Number of successful extensions: 888
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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