SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00786
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)           105   2e-23
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ...   101   3e-22
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45...    45   6e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45...    39   0.003
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45...    39   0.004
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45...    39   0.004
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45...    39   0.004
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    29   3.9  
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof...    29   3.9  
At5g07010.1 68418.m00794 sulfotransferase family protein similar...    28   6.8  
At3g09210.1 68416.m01095 KOW domain-containing transcription fac...    27   9.0  

>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
          Length = 257

 Score =  105 bits (253), Expect = 2e-23
 Identities = 47/69 (68%), Positives = 59/69 (85%)
 Frame = +1

Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
           + + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199

Query: 670 SGDRASFSK 696
           + D+  FSK
Sbjct: 200 NEDKLEFSK 208



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +     K P
Sbjct: 21  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 69



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 34/83 (40%), Positives = 44/83 (53%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           L++RLKVPP +NQFT+TLDK  A  LFK+L KYRPE                        
Sbjct: 62  LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSE 120

Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
             +P  ++ G N VT L+E+ KA
Sbjct: 121 SKKPIVVKYGLNHVTYLIEQNKA 143


>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
           RIBOSOMAL PROTEIN L7A - Oryza sativa,
           SWISSPROT:RL7A_ORYSA
          Length = 256

 Score =  101 bits (243), Expect = 3e-22
 Identities = 46/69 (66%), Positives = 57/69 (82%)
 Frame = +1

Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
           + + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT   L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198

Query: 670 SGDRASFSK 696
           + D+  FSK
Sbjct: 199 NEDKLEFSK 207



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 27/49 (55%), Positives = 35/49 (71%)
 Frame = +1

Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
           NPLFE+RPK F IG  + P +DLSR+++WPK IR+QRQK +     K P
Sbjct: 20  NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68



 Score = 62.1 bits (144), Expect = 3e-10
 Identities = 35/83 (42%), Positives = 44/83 (53%)
 Frame = +3

Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
           L++RLKVPP +NQFT+TLDK  A  LFKIL KYRPE                        
Sbjct: 61  LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAE 119

Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
             +P  ++ G N VT L+E+ KA
Sbjct: 120 SKKPIVVKYGLNHVTYLIEQNKA 142


>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 156

 Score = 44.8 bits (101), Expect = 6e-05
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +1

Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 663
           R ++   VIA ++ PI+++  LP LC + GVPY  V  K  L       R TC  L +  
Sbjct: 64  RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123

Query: 664 VESGD 678
              GD
Sbjct: 124 PAKGD 128


>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
           +V+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 54  IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110


>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 160

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
           +V+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 86  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 142


>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
           +V+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110


>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
           family protein Similar to NHP2/L7Ae family proteins, see
           SWISSPROT:P32495 and PMID:2063628.
          Length = 128

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +1

Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
           +V+A D +P+E++L LP L     VPY  V  K  LG    V R    C   +N  S
Sbjct: 54  VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110


>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
            family protein (MSS2) similar to SMC-related protein MSS2
            [Arabidopsis thaliana] GI:9965743; contains Pfam profiles
            PF02483: SMC family C-terminal domain, PF02463:
            RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -2

Query: 458  SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 300
            + G+ P+  R +F   +  +S  QP  P CF L P  L  LE + +CS++  +
Sbjct: 971  NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021


>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
           profiles PF04780: Protein of unknown function (DUF629),
           PF04781: Protein of unknown function (DUF627)
          Length = 712

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 135 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 251
           S+L  + + LC    H  ++G V+  K + +Y H  PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489


>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 359

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 497 LLLDQLGDCVCAGSDGVGPLWWRLI 423
           +LLDQ  D  C G  G GP W  ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238


>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
           family protein ; est match
          Length = 333

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 419 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 324
           L N S S  P+P+FPGC  +R +  + +  ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,277
Number of Sequences: 28952
Number of extensions: 303692
Number of successful extensions: 957
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -