BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00786 (696 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 105 2e-23 At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 101 3e-22 At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 6e-05 At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.003 At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004 At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004 At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004 At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.9 At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 3.9 At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 6.8 At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.0 >At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) Length = 257 Score = 105 bits (253), Expect = 2e-23 Identities = 47/69 (68%), Positives = 59/69 (85%) Frame = +1 Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669 + + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+ Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199 Query: 670 SGDRASFSK 696 + D+ FSK Sbjct: 200 NEDKLEFSK 208 Score = 65.7 bits (153), Expect = 3e-11 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = +1 Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279 NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK + K P Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 69 Score = 61.7 bits (143), Expect = 5e-10 Identities = 34/83 (40%), Positives = 44/83 (53%) Frame = +3 Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434 L++RLKVPP +NQFT+TLDK A LFK+L KYRPE Sbjct: 62 LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSE 120 Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503 +P ++ G N VT L+E+ KA Sbjct: 121 SKKPIVVKYGLNHVTYLIEQNKA 143 >At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S RIBOSOMAL PROTEIN L7A - Oryza sativa, SWISSPROT:RL7A_ORYSA Length = 256 Score = 101 bits (243), Expect = 3e-22 Identities = 46/69 (66%), Positives = 57/69 (82%) Frame = +1 Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669 + + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+ Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198 Query: 670 SGDRASFSK 696 + D+ FSK Sbjct: 199 NEDKLEFSK 207 Score = 65.7 bits (153), Expect = 3e-11 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = +1 Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279 NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK + K P Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68 Score = 62.1 bits (144), Expect = 3e-10 Identities = 35/83 (42%), Positives = 44/83 (53%) Frame = +3 Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434 L++RLKVPP +NQFT+TLDK A LFKIL KYRPE Sbjct: 61 LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAE 119 Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503 +P ++ G N VT L+E+ KA Sbjct: 120 SKKPIVVKYGLNHVTYLIEQNKA 142 >At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 156 Score = 44.8 bits (101), Expect = 6e-05 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Frame = +1 Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 663 R ++ VIA ++ PI+++ LP LC + GVPY V K L R TC L + Sbjct: 64 RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123 Query: 664 VESGD 678 GD Sbjct: 124 PAKGD 128 >At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 39.1 bits (87), Expect = 0.003 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672 +V+A D +P+E++L LP L VPY V K LG V R C +N S Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110 >At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 160 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672 +V+A D +P+E++L LP L VPY V K LG V R C +N S Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 142 >At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672 +V+A D +P+E++L LP L VPY V K LG V R C +N S Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110 >At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein Similar to NHP2/L7Ae family proteins, see SWISSPROT:P32495 and PMID:2063628. Length = 128 Score = 38.7 bits (86), Expect = 0.004 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%) Frame = +1 Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672 +V+A D +P+E++L LP L VPY V K LG V R C +N S Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110 >At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC) family protein (MSS2) similar to SMC-related protein MSS2 [Arabidopsis thaliana] GI:9965743; contains Pfam profiles PF02483: SMC family C-terminal domain, PF02463: RecF/RecN/SMC N terminal domain Length = 1053 Score = 28.7 bits (61), Expect = 3.9 Identities = 17/53 (32%), Positives = 28/53 (52%) Frame = -2 Query: 458 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 300 + G+ P+ R +F + +S QP P CF L P L LE + +CS++ + Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021 >At2g34240.1 68415.m04189 hypothetical protein contains Pfam profiles PF04780: Protein of unknown function (DUF629), PF04781: Protein of unknown function (DUF627) Length = 712 Score = 28.7 bits (61), Expect = 3.9 Identities = 13/39 (33%), Positives = 21/39 (53%) Frame = +3 Query: 135 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 251 S+L + + LC H ++G V+ K + +Y H PEG Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489 >At5g07010.1 68418.m00794 sulfotransferase family protein similar to steroid sulfotransferase 3 [Brassica napus] GI:3420008, steroid sulfotransferase 1 [Brassica napus] GI:3420004; contains Pfam profile PF00685: Sulfotransferase domain Length = 359 Score = 27.9 bits (59), Expect = 6.8 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -2 Query: 497 LLLDQLGDCVCAGSDGVGPLWWRLI 423 +LLDQ D C G G GP W ++ Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238 >At3g09210.1 68416.m01095 KOW domain-containing transcription factor family protein ; est match Length = 333 Score = 27.5 bits (58), Expect = 9.0 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = -2 Query: 419 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 324 L N S S P+P+FPGC +R + + + ++ Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,694,277 Number of Sequences: 28952 Number of extensions: 303692 Number of successful extensions: 957 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 921 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 956 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1487069504 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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