Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00786
(696 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 105 2e-23
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 101 3e-22
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 45 6e-05
At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.003
At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004
At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004
At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45... 39 0.004
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 29 3.9
At2g34240.1 68415.m04189 hypothetical protein contains Pfam prof... 29 3.9
At5g07010.1 68418.m00794 sulfotransferase family protein similar... 28 6.8
At3g09210.1 68416.m01095 KOW domain-containing transcription fac... 27 9.0
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 105 bits (253), Expect = 2e-23
Identities = 47/69 (68%), Positives = 59/69 (85%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
+ + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT +CL LT V+
Sbjct: 140 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTASCLCLTTVK 199
Query: 670 SGDRASFSK 696
+ D+ FSK
Sbjct: 200 NEDKLEFSK 208
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK + K P
Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 69
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/83 (40%), Positives = 44/83 (53%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFK+L KYRPE
Sbjct: 62 LKQRLKVPPALNQFTKTLDKNLATSLFKVLLKYRPE-DKAAKKERLVKKAQAEAEGKPSE 120
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
+P ++ G N VT L+E+ KA
Sbjct: 121 SKKPIVVKYGLNHVTYLIEQNKA 143
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 101 bits (243), Expect = 3e-22
Identities = 46/69 (66%), Positives = 57/69 (82%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTCLALTNVE 669
+ + + +VIAHDVDPIELV++LPALCRKM VPYCIVKGKSRLGA+VH+KT L LT V+
Sbjct: 139 QNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLGAVVHQKTAAALCLTTVK 198
Query: 670 SGDRASFSK 696
+ D+ FSK
Sbjct: 199 NEDKLEFSK 207
Score = 65.7 bits (153), Expect = 3e-11
Identities = 27/49 (55%), Positives = 35/49 (71%)
Frame = +1
Query: 133 NPLFEKRPKNFAIGQGIQPTRDLSRFVRWPKYIRIQRQKAVFSVV*KCP 279
NPLFE+RPK F IG + P +DLSR+++WPK IR+QRQK + K P
Sbjct: 20 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVP 68
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/83 (42%), Positives = 44/83 (53%)
Frame = +3
Query: 255 LQRRLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETXXXXXXXXXXXXXXXXXXXXXXX 434
L++RLKVPP +NQFT+TLDK A LFKIL KYRPE
Sbjct: 61 LKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPE-DKAAKKERLLNKAQAEAEGKPAE 119
Query: 435 XXRPNTIRSGTNTVTKLVEKKKA 503
+P ++ G N VT L+E+ KA
Sbjct: 120 SKKPIVVKYGLNHVTYLIEQNKA 142
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 44.8 bits (101), Expect = 6e-05
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 490 RRRRRTLVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTCLALTN 663
R ++ VIA ++ PI+++ LP LC + GVPY V K L R TC L +
Sbjct: 64 RGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLK 123
Query: 664 VESGD 678
GD
Sbjct: 124 PAKGD 128
>At4g12600.1 68417.m01986 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 39.1 bits (87), Expect = 0.003
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
+V+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 54 IVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACDVTRPVIACSVTSNEAS 110
>At5g20160.2 68418.m02400 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 160
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
+V+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 86 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 142
>At5g20160.1 68418.m02399 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
+V+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
>At4g22380.1 68417.m03234 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 128
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 508 LVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGAL--VHRKTCTCLALTNVES 672
+V+A D +P+E++L LP L VPY V K LG V R C +N S
Sbjct: 54 VVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEAS 110
>At5g15920.1 68418.m01862 structural maintenance of chromosomes (SMC)
family protein (MSS2) similar to SMC-related protein MSS2
[Arabidopsis thaliana] GI:9965743; contains Pfam profiles
PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1053
Score = 28.7 bits (61), Expect = 3.9
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = -2
Query: 458 SDGVGPLWWRLIFLGNLSFSSFPQPLFPGCFSLRPVFLQNLEKALSCSLVQCL 300
+ G+ P+ R +F + +S QP P CF L P L LE + +CS++ +
Sbjct: 971 NQGMDPINERKMFQQLVRAAS--QPNTPQCFLLTPKLLPELEYSEACSILNIM 1021
>At2g34240.1 68415.m04189 hypothetical protein contains Pfam
profiles PF04780: Protein of unknown function (DUF629),
PF04781: Protein of unknown function (DUF627)
Length = 712
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 135 SSLREEAKELCHWSGHSANSGLVQICKMAQVYPHPAPEG 251
S+L + + LC H ++G V+ K + +Y H PEG
Sbjct: 451 SNLLLDGRLLCEEEHHFDDTGSVETFKSSGIYEHVIPEG 489
>At5g07010.1 68418.m00794 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 359
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 497 LLLDQLGDCVCAGSDGVGPLWWRLI 423
+LLDQ D C G G GP W ++
Sbjct: 214 VLLDQAFDLYCRGVIGFGPFWEHML 238
>At3g09210.1 68416.m01095 KOW domain-containing transcription factor
family protein ; est match
Length = 333
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -2
Query: 419 LGNLSFSSFPQPLFPGCFSLRPVFLQNLEKAL 324
L N S S P+P+FPGC +R + + + ++
Sbjct: 141 LKNGSISVKPKPVFPGCIFIRCILNKEIHDSI 172
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,694,277
Number of Sequences: 28952
Number of extensions: 303692
Number of successful extensions: 957
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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