Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00785
         (839 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   3.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.0  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 108 HMDIIYFSLFHLNINSVVLKCLWN 37
           + +I+YFS    +INS V   L+N
Sbjct: 331 YYNILYFSRIMFHINSAVNPILYN 354



 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 143 YFISLLTFIALNIWI 99
           +FI LL F AL  WI
Sbjct: 301 FFICLLPFRALTFWI 315


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 551 MIPHINSISNIFRKSLF*CEKMTSLVPALGYYGT 450
           +IP + +     RK L+   KM SL   L  +GT
Sbjct: 130 LIPEVGTWIRAVRKCLYKLWKMPSLSEFLSLFGT 163


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 551 MIPHINSISNIFRKSLF*CEKMTSLVPALGYYGT 450
           +IP + +     RK L+   KM SL   L  +GT
Sbjct: 130 LIPEVGTWIRAVRKCLYKLWKMPSLSEFLSLFGT 163


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 553 SYHQYFSHKYGQK 591
           SYHQ  SH YG++
Sbjct: 791 SYHQQQSHHYGRR 803


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,592
Number of Sequences: 336
Number of extensions: 3266
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23140487
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)