Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00785
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    28   1.9  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    27   4.4  

>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 414 KQIHT*NLRNKPSNDIKVKPTVCSIGSIEM 325
           K + T NL NKP +     P++ SIGS+E+
Sbjct: 323 KLLSTSNLNNKPLSLSSTAPSMPSIGSVEL 352


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 152 YRIYFISLLTFIALNIWI 99
           YR YFIS L F + + WI
Sbjct: 489 YRFYFISALIFTSYSFWI 506


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,138
Number of Sequences: 5004
Number of extensions: 54350
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)