Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00785
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0514 - 3985204-3985266,3985920-3986061,3986144-3986276,398...    29   3.5  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    29   6.1  

>11_01_0514 -
           3985204-3985266,3985920-3986061,3986144-3986276,
           3986703-3986817,3987496-3987549,3987787-3987912,
           3989179-3989319,3989470-3989552,3989643-3989733,
           3990318-3990405,3992705-3992832
          Length = 387

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 358 FDFDIITWFISEILRVNLLFFLSYMKQSGRGVP 456
           +D+D+  WF + IL+V  +  + Y      GVP
Sbjct: 261 YDYDLFAWFPNSILQVRHVLHILYSDWPDHGVP 293


>02_05_1331 +
           35736543-35736638,35737407-35737525,35737670-35737715,
           35738117-35738172,35738452-35738547,35738844-35738961,
           35739406-35739672,35740023-35740124,35740302-35740659,
           35740750-35740863,35741045-35741676,35741895-35742103,
           35742597-35742819,35743419-35743538,35743888-35743914,
           35744281-35745045,35745431-35748511
          Length = 2142

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -3

Query: 132 TANFYCSQHMDIIYFSLFHLNINSVVLKCL 43
           T N + SQHM+I+Y  L   N  S+ L CL
Sbjct: 283 TFNTHFSQHMEILYKYLKDKNHRSMALDCL 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,270,541
Number of Sequences: 37544
Number of extensions: 270432
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)