Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00785
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical pr...    29   5.4  
AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protei...    29   5.4  
AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A prot...    29   5.4  

>Z93381-2|CAB07605.1|  374|Caenorhabditis elegans Hypothetical
           protein F28G4.2 protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -1

Query: 725 INHLCNIYFLPVTLS 681
           +NH+CNI F+P TLS
Sbjct: 89  LNHICNIQFIPNTLS 103


>AC024825-1|ABA00169.1| 1908|Caenorhabditis elegans Plexin protein 1
           protein.
          Length = 1908

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 384 YFGDFTCEFAFFFILHEAIGPRRS 455
           + GDF CEF +  + HE I  R S
Sbjct: 740 FMGDFKCEFKYGTVTHEKIAMRTS 763


>AB080022-1|BAB85224.1| 1951|Caenorhabditis elegans plexin A
           protein.
          Length = 1951

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 384 YFGDFTCEFAFFFILHEAIGPRRS 455
           + GDF CEF +  + HE I  R S
Sbjct: 746 FMGDFKCEFKYGTVTHEKIAMRTS 769


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,546,956
Number of Sequences: 27780
Number of extensions: 285817
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)