Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00784
         (765 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyc...    26   5.1  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   6.8  
SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|...    25   9.0  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    25   9.0  

>SPCC1281.07c |||glutathione S-transferase Gst3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 313

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 66  IWSLNYN-FVNSEKSEIVRYFIELSEDYME 152
           +W   YN  VN+E +EI+R F +   + +E
Sbjct: 121 LWDSKYNTIVNNESAEIIRMFNDAFNEVIE 150


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 33  EAFVK*MNMKNIWSLNYNFVN-SEKSEIVRYFIELSED 143
           ++ VK ++ K  WS+ Y+F    ++  ++R +I L +D
Sbjct: 457 KSVVKHLDEKETWSIKYHFRKPRDQDNLLRNYIRLRDD 494


>SPCC553.02 |||glutamine-dependent NAD|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 764 SPCRVSLFVKRYFRFYGSN 708
           SP +V+  VKR+F +YG N
Sbjct: 629 SPSQVAEKVKRFFHYYGIN 647


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 379 RFCISFHLSKAFLTFFCKPLFSYSSKKFVHK 287
           +  +S H  +  L F  KP F++ S K +H+
Sbjct: 14  KLSLSLHAPRNALRFVHKPAFTFESYKSLHR 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,895
Number of Sequences: 5004
Number of extensions: 58267
Number of successful extensions: 139
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)