Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00784
         (765 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein / c...    30   1.5  
At3g20950.1 68416.m02648 cytochrome P450 family protein similar ...    29   2.6  
At3g02470.1 68416.m00235 adenosylmethionine decarboxylase family...    29   4.5  

>At5g17500.1 68418.m02053 glycosyl hydrolase family 5 protein /
           cellulase family protein predicted protein F3F19.15 -
           Arabidopsis thaliana, EMBL:AC007357
          Length = 526

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 125 YRIIRRLYGIENVFVGVGIKNLHNKVNGHKMRNVCLSRLWIC 250
           Y  +RRL  I+    G G+K+ H+K   H +  +CL R   C
Sbjct: 378 YTYLRRLSVIQPPHTGPGVKHNHHKKIFHPLTGLCLVRKSHC 419


>At3g20950.1 68416.m02648 cytochrome P450 family protein similar to
           Cytochrome P450 93A3  (P450 CP5) (SP:O81973)  [Glycine
           max];
          Length = 526

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 618 FYLP*KYIHIIEVYILLSDPKIKNDEHD 701
           FY+P K + ++ VY ++ DPK+  D  +
Sbjct: 396 FYIPEKTLLVVNVYAIMRDPKLWEDPEE 423


>At3g02470.1 68416.m00235 adenosylmethionine decarboxylase family
           protein contains Pfam profile: PF01536
           adenosylmethionine decarboxylase
          Length = 366

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 169 WCWNKKSTQQSEWS*NEECMSESAMD 246
           +C + +ST + EWS N  C SE   D
Sbjct: 338 YCGSPRSTLKCEWSSNNSCSSEDEKD 363


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,923
Number of Sequences: 28952
Number of extensions: 266778
Number of successful extensions: 583
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)