Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00783
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 154 1e-38
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 153 2e-38
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 135 7e-33
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 133 3e-32
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 120 2e-28
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 74 3e-14
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 69 7e-13
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 64 2e-11
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 29 0.94
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 28 1.2
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 27 2.9
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 26 5.0
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 5.0
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.0
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 26 6.6
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.8
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 25 8.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 8.8
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p... 25 8.8
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 8.8
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 25 8.8
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 154 bits (373), Expect = 1e-38
Identities = 71/84 (84%), Positives = 79/84 (94%)
Frame = +2
Query: 257 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 436
DLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFKRK KKD+ N R
Sbjct: 197 DLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFKRKNKKDITGNAR 256
Query: 437 ALRRLRTACERAKRTLSSSTQASI 508
A+RRLRTACERAKRTLSSS QASI
Sbjct: 257 AVRRLRTACERAKRTLSSSAQASI 280
Score = 140 bits (338), Expect = 3e-34
Identities = 68/84 (80%), Positives = 74/84 (88%)
Frame = +3
Query: 3 FFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 182
F PEE+SSMVL KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRII
Sbjct: 112 FTPEEISSMVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRII 171
Query: 183 NEPTAAAIAYGLDKKGTGERNVLI 254
NEPTAAAIAYGLD+ GE NVLI
Sbjct: 172 NEPTAAAIAYGLDRSNQGESNVLI 195
Score = 138 bits (333), Expect = 1e-33
Identities = 66/81 (81%), Positives = 74/81 (91%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
IDSLFEGIDFYTSITRARFEEL ADLFR TMEPVE+ LRD+K+DKA +++IVLVGGSTRI
Sbjct: 282 IDSLFEGIDFYTSITRARFEELCADLFRKTMEPVERVLRDSKVDKASVNEIVLVGGSTRI 341
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
P+VQKL+ DFFNGKE KSIN
Sbjct: 342 PRVQKLVSDFFNGKEPCKSIN 362
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 153 bits (372), Expect = 2e-38
Identities = 72/90 (80%), Positives = 79/90 (87%)
Frame = +2
Query: 239 TKCTYLDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKD 418
T DLGGGTFDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFKRK KKD
Sbjct: 191 TNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFKRKNKKD 250
Query: 419 LATNKRALRRLRTACERAKRTLSSSTQASI 508
+ N RA+RRLRTACERAKRTLSSS QASI
Sbjct: 251 ITGNARAVRRLRTACERAKRTLSSSAQASI 280
Score = 136 bits (330), Expect = 2e-33
Identities = 64/81 (79%), Positives = 75/81 (92%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
IDSL+EGIDFYTSITRARFEEL ADLFR+TMEPVEK LRD+K+DK+ +++IVLVGGSTRI
Sbjct: 282 IDSLYEGIDFYTSITRARFEELCADLFRNTMEPVEKVLRDSKIDKSSVNEIVLVGGSTRI 341
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
P++QKL+ DFFNGKE KSIN
Sbjct: 342 PRIQKLVSDFFNGKEPCKSIN 362
Score = 133 bits (322), Expect = 2e-32
Identities = 65/84 (77%), Positives = 73/84 (86%)
Frame = +3
Query: 3 FFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 182
F PEE+SSMVL KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRII
Sbjct: 112 FTPEEISSMVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRII 171
Query: 183 NEPTAAAIAYGLDKKGTGERNVLI 254
NEPTAAAIAYGLD+ E NVLI
Sbjct: 172 NEPTAAAIAYGLDRSNQHETNVLI 195
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 135 bits (326), Expect = 7e-33
Identities = 62/84 (73%), Positives = 78/84 (92%)
Frame = +3
Query: 3 FFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 182
F PEE+S+M+L+KMK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+
Sbjct: 145 FTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIV 204
Query: 183 NEPTAAAIAYGLDKKGTGERNVLI 254
NEPTAAAIAYGLDK T E+++++
Sbjct: 205 NEPTAAAIAYGLDKTDT-EKHIVV 227
Score = 104 bits (249), Expect = 2e-23
Identities = 47/85 (55%), Positives = 67/85 (78%)
Frame = +2
Query: 257 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 436
DLGGGTFDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + + RK D+ + +
Sbjct: 229 DLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLK 288
Query: 437 ALRRLRTACERAKRTLSSSTQASIR 511
A+ +L+ E+AKRTLSS Q S+R
Sbjct: 289 AMGKLKREVEKAKRTLSS--QKSVR 311
Score = 102 bits (244), Expect = 6e-23
Identities = 47/81 (58%), Positives = 66/81 (81%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
I+S F G DF +++RA+FEE+N DLF+ T++PVE+ L+D+ + K++I DIVLVGGSTRI
Sbjct: 314 IESFFNGQDFSETLSRAKFEEINMDLFKKTLKPVEQVLKDSNLKKSEIDDIVLVGGSTRI 373
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
PKVQ+LL+ FF GK+ +K IN
Sbjct: 374 PKVQELLESFF-GKKASKGIN 393
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 133 bits (321), Expect = 3e-32
Identities = 60/84 (71%), Positives = 72/84 (85%)
Frame = +2
Query: 257 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 436
DLGGGTFDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFKRK K D++ + R
Sbjct: 201 DLGGGTFDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFKRKQKIDISDDPR 260
Query: 437 ALRRLRTACERAKRTLSSSTQASI 508
ALRRLR+ACERAKR LSS TQ ++
Sbjct: 261 ALRRLRSACERAKRALSSVTQTTV 284
Score = 124 bits (300), Expect = 1e-29
Identities = 62/84 (73%), Positives = 70/84 (83%)
Frame = +3
Query: 3 FFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 182
F +E+S+MVLTKMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLRII
Sbjct: 116 FTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRII 175
Query: 183 NEPTAAAIAYGLDKKGTGERNVLI 254
NEPTAAAIAYGLD K +NVLI
Sbjct: 176 NEPTAAAIAYGLDAKSDKPKNVLI 199
Score = 120 bits (289), Expect = 2e-28
Identities = 54/81 (66%), Positives = 70/81 (86%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
+DSL GIDF +SITRARFE++NA F++T++PV K L+D+K+ KA +HDIVLVGGSTRI
Sbjct: 286 VDSLSNGIDFSSSITRARFEDINATTFKATIDPVAKVLKDSKVPKADVHDIVLVGGSTRI 345
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
PKVQ+L+ DFF+G+ LNKSIN
Sbjct: 346 PKVQRLVSDFFDGRALNKSIN 366
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 120 bits (290), Expect = 2e-28
Identities = 53/75 (70%), Positives = 65/75 (86%)
Frame = +3
Query: 3 FFPEEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRII 182
+ P ++ +L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++
Sbjct: 158 YSPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVV 217
Query: 183 NEPTAAAIAYGLDKK 227
NEPTAAA+AYGLDKK
Sbjct: 218 NEPTAAALAYGLDKK 232
Score = 101 bits (241), Expect = 1e-22
Identities = 46/84 (54%), Positives = 63/84 (75%)
Frame = +2
Query: 257 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 436
DLGGGTFD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK+ DL+ ++
Sbjct: 241 DLGGGTFDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFKKNEGLDLSKDRL 300
Query: 437 ALRRLRTACERAKRTLSSSTQASI 508
A++R+R A E+AK LSS ++ I
Sbjct: 301 AVQRIREAAEKAKCELSSLSKTDI 324
Score = 60.9 bits (141), Expect = 2e-10
Identities = 27/68 (39%), Positives = 50/68 (73%)
Frame = +1
Query: 550 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNG 729
I+RA+FE+L L R T++P +++L+DA + ++I++++LVGG TR+P+V + ++ F
Sbjct: 343 ISRAQFEKLVDPLVRRTIDPCKRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK- 401
Query: 730 KELNKSIN 753
+E KS+N
Sbjct: 402 REPAKSVN 409
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 73.7 bits (173), Expect = 3e-14
Identities = 34/85 (40%), Positives = 51/85 (60%)
Frame = +2
Query: 254 LDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNK 433
+D G + VSI+ G F +KST D +LG + D ++++F EFK KYK D+ +N
Sbjct: 204 VDFGHSNYSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFKEKYKIDVLSNP 263
Query: 434 RALRRLRTACERAKRTLSSSTQASI 508
+A RL TA ER K+ LS++ A +
Sbjct: 264 KATFRLATAVERLKKVLSANANAPL 288
Score = 65.3 bits (152), Expect = 9e-12
Identities = 31/63 (49%), Positives = 45/63 (71%)
Frame = +3
Query: 36 TKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYG 215
TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA+ YG
Sbjct: 127 TKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAALTYG 186
Query: 216 LDK 224
+ K
Sbjct: 187 ITK 189
Score = 54.8 bits (126), Expect = 1e-08
Identities = 28/81 (34%), Positives = 49/81 (60%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
++ + ID + I R+ FEEL L P+EK+L A + K ++ I +VGG TR+
Sbjct: 290 VEMIMNDIDASSFIKRSDFEELIKPLLERLTPPIEKALELAGIKKEDLYSIEMVGGCTRV 349
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
P V++++ ++F GK L+ ++N
Sbjct: 350 PIVKEVIANYF-GKGLSFTLN 369
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 68.9 bits (161), Expect = 7e-13
Identities = 30/81 (37%), Positives = 54/81 (66%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
I+ L +GIDF ITR+ E L D+ + +EP+ K+L+ A + ++I+ I+L GG++RI
Sbjct: 318 IEELADGIDFRLKITRSVLESLCKDMEDAAVEPINKALKKANLTFSEINSIILFGGASRI 377
Query: 691 PKVQKLLQDFFNGKELNKSIN 753
P +Q L D+ + +++K++N
Sbjct: 378 PFIQSTLADYVSSDKISKNVN 398
Score = 46.8 bits (106), Expect = 3e-06
Identities = 27/96 (28%), Positives = 48/96 (50%)
Frame = +3
Query: 12 EEVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEP 191
EE+ +M + AE + + + V+TVP +FN+ QR +A I +VL +I++
Sbjct: 138 EEIIAMTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDN 197
Query: 192 TAAAIAYGLDKKGTGERNVLILTSAAVPSTCPSLPS 299
A AI Y L + + + I+ + ST ++ S
Sbjct: 198 VAVAIEYSLSRSFSTDPTYNIIYDSGSGSTSATVIS 233
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 64.1 bits (149), Expect = 2e-11
Identities = 30/83 (36%), Positives = 50/83 (60%)
Frame = +2
Query: 257 DLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKR 436
+ G +VS+++++ G+ + ++ D +LGGE + +VN F +EF++K D N R
Sbjct: 223 NFGATRSEVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFEKKNGIDPRKNAR 282
Query: 437 ALRRLRTACERAKRTLSSSTQAS 505
+L +LR CE KR LS+ T AS
Sbjct: 283 SLAKLRAQCEITKRVLSNGTTAS 305
Score = 59.3 bits (137), Expect = 6e-10
Identities = 30/88 (34%), Positives = 51/88 (57%)
Frame = +3
Query: 15 EVSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPT 194
E S L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL++I++P
Sbjct: 142 EASVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPA 201
Query: 195 AAAIAYGLDKKGTGERNVLILTSAAVPS 278
A +A ++ ++ V++ A S
Sbjct: 202 AVILALMYSEEVLIDKTVVVANFGATRS 229
Score = 52.4 bits (120), Expect = 7e-08
Identities = 23/79 (29%), Positives = 46/79 (58%)
Frame = +1
Query: 511 IDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRI 690
+DSL +GIDF++SI R R++ + + V +++ A M+ I +++L GG++
Sbjct: 308 VDSLADGIDFHSSINRLRYDLAASATLNRMADLVTEAVEKANMEPFDISEVILAGGASNT 367
Query: 691 PKVQKLLQDFFNGKELNKS 747
PK+ L++ F + + +S
Sbjct: 368 PKLTSLMESIFPEQTIIRS 386
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 28.7 bits (61), Expect = 0.94
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Frame = +3
Query: 219 DKKGTGERNV----LILTSAAVPSTCPSLPSRMVSSR*NPPPATPTWEVR--TLTIAWST 380
D K GE N+ I+ + P T S P S NPP + P +V + T+A ST
Sbjct: 53 DDKTVGEYNIKEQDFIVCMVSRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAEST 112
Query: 381 TLSRS 395
+ +++
Sbjct: 113 STTQT 117
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 363 SKSSPPKWVSPAVDFTSKIPSSMVRMDTSKVP 268
+KSSP K VSP V SK +S V + S +P
Sbjct: 203 NKSSPVKHVSPNVKNNSKKTASSVNSNHSSIP 234
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 298 DGKDGHVEGTAAEVKISTFRSPVPFLSR 215
D DGH+ T A + TF P P LS+
Sbjct: 28 DSFDGHLSITEATYDVDTFLKPSPALSK 55
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 405 NTKRTSLPTRELLGVCVLHVRGQR-GPCHRPHKRAL 509
N K+ LP E + + + V G GP H+PH R L
Sbjct: 9 NQKKNVLPKPEDIQLIICDVDGTLLGPDHKPHPRNL 44
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 658 RGFEPYPSWHHGETSPLAP 602
+ +P P+ HG+TSPL+P
Sbjct: 420 KAIKPMPTSIHGQTSPLSP 438
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 399 LNSWTKWLTMRLSKSSPPKWVSPAVDF 319
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.8 bits (54), Expect = 6.6
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +1
Query: 517 SLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVG 675
SL G+D+YT I E +A +S+ E +K D + D++ D + VG
Sbjct: 331 SLARGLDYYTGIIYEAVTEASAPKIKSSAE--KKKSADPEADRSN-DDSIGVG 380
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 333 PAVDFTSKIPSSMVRMDTSKVPPPRSR 253
P+V FT + + ++R+ S +PPP R
Sbjct: 378 PSVMFTMRYLALILRVQNSNMPPPAPR 404
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = -3
Query: 641 SILASRRDFSTGSMVDLNRSAFSSSKRARVIDV*KSIPS----KRESI*CSLV 495
S +R D TGS+ L R FSS+ R+I+ +P+ KR + CS +
Sbjct: 258 SYSTARDDRITGSLATLLRLNFSSTHFLRLIEFYWGVPTNLIIKRVEVVCSSI 310
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 371 MVNHFVQEFKRKYKKDLATNKRALRRLRTACERAKRTLSSSTQASI 508
+++ F EFK++ K D + L+ L + C R R SS SI
Sbjct: 711 ILSSFSNEFKKRLKSDGTSIAHWLQGLASFCGRVFRRYSSLDCTSI 756
>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 584 ICSGLPWSQ----WRSLSVMPRWIRLKSTILYWW 673
ICS LP + W + S PR+ R S ++ WW
Sbjct: 133 ICSALPAAGSIYLWAAESAGPRFGRFVSFLVAWW 166
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 18 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 140
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +3
Query: 267 AVPSTCPSLPSRMVSSR*NPPPATPTW 347
++PST P++PS +S + PP T ++
Sbjct: 299 SIPSTIPTIPSAYSASVSSQPPLTHSY 325
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,307,249
Number of Sequences: 5004
Number of extensions: 70932
Number of successful extensions: 274
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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