Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00782
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   1.1  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.8  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   7.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +2

Query: 194  VAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRANL 301
            VA +E  +L  +GG TIA  R I    T  II ANL
Sbjct: 1574 VAEYEFATLTVTGG-TIAPAREIPKEDTFQIILANL 1608


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 102 HLDAINCLST*SCQLIL 52
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 102 HLDAINCLST*SCQLIL 52
           HL A N LS   C+L+L
Sbjct: 83  HLAAANILSPEDCELVL 99


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,659
Number of Sequences: 336
Number of extensions: 3917
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)