Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00782
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 63 3e-10
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 61 8e-10
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 61 8e-10
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.025
09_02_0152 + 5040845-5041001,5042645-5042757,5043556-5043816,504... 30 2.2
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 28 6.7
02_05_0116 - 25976234-25976394,25976485-25976701,25977345-259774... 28 8.8
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 8.8
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 62.9 bits (146), Expect = 3e-10
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Frame = +2
Query: 56 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 223
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 224 TSGGVTIAGTRYIYLSGTDHII 289
G+ + GT+Y+ + G ++
Sbjct: 61 APTGLFLGGTKYMVIQGEPGVV 82
Score = 41.1 bits (92), Expect = 9e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +1
Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 429
G G+ KT ++++ +Y+EP+ P Q +VE+LG+YLI G
Sbjct: 88 GTGGICVKKTGLSLILGIYDEPMTPGQCNMIVERLGDYLIEQG 130
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +2
Query: 56 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 223
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 224 TSGGVTIAGTRYIYLSG 274
G+ + T+Y+ + G
Sbjct: 61 APTGLFLGPTKYMVIQG 77
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 429
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 61.3 bits (142), Expect = 8e-10
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Frame = +2
Query: 56 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 223
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 224 TSGGVTIAGTRYIYLSG 274
G+ + T+Y+ + G
Sbjct: 61 APTGLFLGPTKYMVIQG 77
Score = 46.8 bits (106), Expect = 2e-05
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +1
Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCG 429
G G+ KT QA+V+ +Y+EP+ P Q VVE+LG+YL+ G
Sbjct: 88 GSGGITVKKTGQALVVGIYDEPMTPGQCNMVVERLGDYLVEQG 130
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +2
Query: 149 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 241
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>09_02_0152 +
5040845-5041001,5042645-5042757,5043556-5043816,
5043954-5044058,5044726-5044791,5044882-5044999,
5045018-5045103,5045900-5046424,5046534-5047115,
5047203-5047385,5049326-5049392,5049685-5049791,
5049977-5050076,5050228-5050313,5050394-5050485,
5050591-5050705,5050792-5050983
Length = 984
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Frame = +2
Query: 116 AIAGHDGNV--WAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHII 289
A AG D + W K +G + + + + G + E + S + G+RY+ G+ HI+
Sbjct: 57 ASAGDDKKISLWHK-KGQNVGQLPTSTVDRGDDIEECIYSISFSNKGSRYLCSGGSGHIV 115
Query: 290 RA-NLARSACI 319
R +L R CI
Sbjct: 116 RIWDLQRKRCI 126
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.3 bits (60), Expect = 6.7
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = -1
Query: 275 CH*GRCSACPLSSRR 231
CH G+C CPL RR
Sbjct: 324 CHAGKCGGCPLQGRR 338
>02_05_0116 -
25976234-25976394,25976485-25976701,25977345-25977466,
25977570-25977718,25978095-25978212,25978293-25978638
Length = 370
Score = 27.9 bits (59), Expect = 8.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -3
Query: 579 DYAAIIYRISKQMNGPLITL*NIQMQLLISPWKKFYLIV 463
D A + +S++M+ +++ I L+I+PWK + +
Sbjct: 242 DAATLESSVSRKMDSTCLSVIGISWNLIIAPWKMLFAFI 280
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -3
Query: 234 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 109
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,755,181
Number of Sequences: 37544
Number of extensions: 409806
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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