Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00782
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)                   30   1.7  
SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)                 29   3.9  
SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)                  29   3.9  
SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)                29   5.2  
SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  

>SB_24515| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 20/55 (36%), Positives = 32/55 (58%)
 Frame = +2

Query: 104 VTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGTRYIYL 268
           V +AAI G DG+ WA S GF +S+ E  +++   ++ S+      TI G +Y+ L
Sbjct: 7   VQRAAIHGLDGSCWATSSGFSVSQQEAMELLKSLKDGSV---SAKTIGGAKYMML 58


>SB_22107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
 Frame = +2

Query: 56  MSWQDYVDKQLMASRCVT------KAAIAGHDGNV-WAKSE---GFEISKDEVAKIVAGF 205
           MSW  Y+D  L  ++  T      KA I G DG   W  +      ++  +E  KI   F
Sbjct: 112 MSWDSYIDNLLAQAKDATGNCHADKACIIGLDGGAPWTSAGHACAVKLQPEECTKIANCF 171

Query: 206 ENESLLT--SGGVTIAGTRYIYLSGTD 280
           +N+   +  S G+   G +Y +L   D
Sbjct: 172 KNKDFTSFMSSGIHAEGEKYQFLREED 198


>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
          Length = 571

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 432
           G  G   + T Q ++I  Y E + P   ++V EKL +Y    G+
Sbjct: 528 GNEGAVAVLTSQCLLIGAYSEGMTPGCCSAVTEKLADYFRVNGF 571


>SB_27836| Best HMM Match : DUF92 (HMM E-Value=2.2e-09)
          Length = 355

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 77  DKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTIAGT 253
           D  LMA   +   A+A   G+ W+   G  I K    +++       + T+GGVTI GT
Sbjct: 174 DASLMAMAVL--GALACSCGDTWSSEIGTAI-KSHTPRLITTLRKVPVGTNGGVTIPGT 229


>SB_47020| Best HMM Match : Profilin (HMM E-Value=1.8)
          Length = 404

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 304 KVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLG 408
           K G+  +KT   ++++LY + + P       EKLG
Sbjct: 42  KTGIVAIKTATLILVALYSQEMSPSICVEASEKLG 76


>SB_10315| Best HMM Match : Pentaxin (HMM E-Value=5e-12)
          Length = 697

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 128 HDGNVWAKSEGF-EISKDEVAKIV-AGFENESLLTSGGVTIAGTRYIYLSG 274
           H G  W  ++G  EI  D + ++   GF     L +GG  + G  Y  L+G
Sbjct: 380 HYGITWRSNDGHVEIHADGILRLSQTGFATGHTLPAGGTMVLGQSYRVLNG 430


>SB_23075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 68  DYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGGVTI 244
           D++ +Q+  S C+   A+A   G    K   F +  D   ++V   + ++L TS  + I
Sbjct: 249 DFIMRQIETSNCLRILALAERHGLKILKEAAFSVIMDNFTEVVETDDFKNLSTSQVIDI 307


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,140,215
Number of Sequences: 59808
Number of extensions: 488513
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)