Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00782
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protei... 61 9e-10
AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3 pr... 61 9e-10
AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1 pr... 45 5e-05
AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical... 45 5e-05
U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protei... 40 0.002
AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2 pr... 40 0.002
Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical pr... 28 6.0
>U55375-5|AAC69045.1| 126|Caenorhabditis elegans Profilin protein 3
protein.
Length = 126
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 235
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + L G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Query: 236 VTIAGTRYIYLSG-TDHII 289
+ + G +++ L+ D II
Sbjct: 61 LRLEGQKFLVLNADNDRII 79
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 432
G G KT QAV+IS+YE+ +QP+ + L +Y + Y
Sbjct: 83 GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530910-1|AAT01435.1| 126|Caenorhabditis elegans profilin-3
protein.
Length = 126
Score = 60.9 bits (141), Expect = 9e-10
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +2
Query: 56 MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 235
MSW D ++ L+ S V+KAAI G DG VWAKS+ F IS +E F + L G
Sbjct: 1 MSWSDIINNNLIGSGNVSKAAILGFDGAVWAKSDNFNISVEEAVAAGKAFTSLDALLGTG 60
Query: 236 VTIAGTRYIYLSG-TDHII 289
+ + G +++ L+ D II
Sbjct: 61 LRLEGQKFLVLNADNDRII 79
Score = 35.1 bits (77), Expect = 0.052
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 301 GKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 432
G G KT QAV+IS+YE+ +QP+ + L +Y + Y
Sbjct: 83 GGSGFFIYKTIQAVIISIYEKGLQPEMCSKTTGALADYFRSIKY 126
>AY530908-1|AAT01433.1| 132|Caenorhabditis elegans profilin-1
protein.
Length = 132
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 229
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 230 GGVTIAGTRYI 262
G I G Y+
Sbjct: 64 KGADIEGVHYV 74
>AL034393-15|CAA22318.1| 132|Caenorhabditis elegans Hypothetical
protein Y18D10A.20 protein.
Length = 132
Score = 45.2 bits (102), Expect = 5e-05
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +2
Query: 62 WQDYVDKQLMASRCVTKAAIAGH-DGNVWAKSEG---FEISKDEVAKIVAGFENESLLTS 229
W Y+D A+ + + AI G DG+VWA++E F+ S++E+ VA F + + + +
Sbjct: 4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPA 63
Query: 230 GGVTIAGTRYI 262
G I G Y+
Sbjct: 64 KGADIEGVHYV 74
>U40941-2|AAA81708.3| 131|Caenorhabditis elegans Profilin protein 2
protein.
Length = 131
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 62 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 232
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 233 GVTIAGTRYI 262
G + YI
Sbjct: 64 GADLEEIHYI 73
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 KVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 432
+ G KT QA+VI++YE + Q + VE + +YL + GY
Sbjct: 88 QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>AY530909-1|AAT01434.1| 131|Caenorhabditis elegans profilin-2
protein.
Length = 131
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Frame = +2
Query: 62 WQDYVDKQLMASRCVTKAAIAGHDGNVWAKS---EGFEISKDEVAKIVAGFENESLLTSG 232
W DY+ S + +AAI G DG+VWA+S F ++ E+ + A F + + +
Sbjct: 4 WDDYIKLLFGKSPAIKRAAIIGSDGSVWARSGDANAFRATEVELKRFAALFNDINSVPGT 63
Query: 233 GVTIAGTRYI 262
G + YI
Sbjct: 64 GADLEEIHYI 73
Score = 32.7 bits (71), Expect = 0.28
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 304 KVGVHCMKTQQAVVISLYE-EPIQPQQAASVVEKLGEYLITCGY 432
+ G KT QA+VI++YE + Q + VE + +YL + GY
Sbjct: 88 QTGFFAAKTNQAIVIAMYEGDNAQSASVRAGVEYIAQYLASSGY 131
>Z81564-9|CAB04575.1| 724|Caenorhabditis elegans Hypothetical
protein K05C4.9 protein.
Length = 724
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 568 HNLSNIKTNERSSYHFIEYTNA---VTYFPVEKILSYSTLRSRRASTSNN 428
H LSN+K + S ++E+ NA V F + + +S+ TS N
Sbjct: 197 HGLSNLKNLQELSIRYLEFANANNLVDLFQLTNLKVLDMSKSKNLETSKN 246
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,072,597
Number of Sequences: 27780
Number of extensions: 357933
Number of successful extensions: 852
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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