Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00782
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.          142   4e-36
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.9  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.2  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score =  142 bits (343), Expect = 4e-36
 Identities = 63/84 (75%), Positives = 74/84 (88%)
 Frame = +2

Query: 56  MSWQDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLTSGG 235
           MS QDYVDKQL+ASRCVTKAAIAGHDGN+WAKSEGFE+SK+E+ K+V GFE + +LTS G
Sbjct: 1   MSCQDYVDKQLLASRCVTKAAIAGHDGNLWAKSEGFEVSKEELTKLVQGFEEQDILTSSG 60

Query: 236 VTIAGTRYIYLSGTDHIIRANLAR 307
           VT+AG RYIYLSGTD +IRA L +
Sbjct: 61  VTLAGNRYIYLSGTDRVIRAKLGK 84



 Score = 90.6 bits (215), Expect = 1e-20
 Identities = 39/46 (84%), Positives = 45/46 (97%)
 Frame = +1

Query: 295 ELGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGEYLITCGY 432
           +LGKVGVHCMKT QAVV+SLYE+PIQPQQAASVVEKLG+YL++CGY
Sbjct: 81  KLGKVGVHCMKTTQAVVVSLYEDPIQPQQAASVVEKLGDYLVSCGY 126


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 170 SKDEVAKIVAGFENESLLTSGGVTIAGTRYIYLSGTDHIIRANLA 304
           +K E+  IV GF  +  L S    + G   IYL+   +I+  N++
Sbjct: 16  TKSEINDIV-GFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNIS 59


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -3

Query: 372 LDGFFIERNDHSLLCLH 322
           + G  IER DH++LC++
Sbjct: 327 ISGAPIERPDHAVLCVY 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 155 PTL-PTHCHHDRQWQLL*HI 99
           PT+ P H HH  Q Q L H+
Sbjct: 345 PTMGPPHHHHHHQTQSLQHL 364


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/24 (37%), Positives = 10/24 (41%)
 Frame = +2

Query: 68  DYVDKQLMASRCVTKAAIAGHDGN 139
           D +   L   RC  K    G DGN
Sbjct: 447 DVISGNLEKGRCTGKIVTVGSDGN 470


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,116
Number of Sequences: 438
Number of extensions: 4432
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)