Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00781
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 6e-10
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32) 32 0.40
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23) 32 0.40
SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018) 29 5.0
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 28 6.6
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 28 6.6
SB_51986| Best HMM Match : HLH (HMM E-Value=0.15) 28 8.7
>SB_58404| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 61.7 bits (143), Expect = 6e-10
Identities = 31/75 (41%), Positives = 46/75 (61%)
Frame = +3
Query: 39 MPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 218
MPSA++ S+ A + D + + ++E K+RNLEKRK KL Y+ +G+ELN+DQ
Sbjct: 1 MPSASSKPSDSQALMDSSDIA-KSGLLLVEKKVRNLEKRKLKLDGYKKQMDSGQELNADQ 59
Query: 219 KVAVAKYDEVAQPLN 263
K A+A D V L+
Sbjct: 60 KAAIANLDVVEMNLD 74
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/51 (47%), Positives = 32/51 (62%)
Frame = +2
Query: 353 RYAAETNKIKEVLLILDCLMQMGSADARTDFINGTNGAAKLTEDDLKILDD 505
++ A+ K+ EVL L LM S D RTDF+NGTNGA +TED +D+
Sbjct: 109 QHNADVLKVNEVLE-LQHLMDSLSEDVRTDFLNGTNGAVVVTEDQFVQIDE 158
>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
Length = 2436
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 90 KDTPIRQIMTIIEHKIRNLEKRKSKLTSY-RDLQKAGKELNSDQKVAVAK 236
KD+ ++ ++ E KIR L+KR S+L S R L+ K+L D+K A+ K
Sbjct: 322 KDSGNQKATSLGEEKIRKLKKRNSELVSIARQLEDKAKKL-QDEKNAILK 370
>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
Length = 3368
Score = 32.3 bits (70), Expect = 0.40
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 6 TQSKKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDL 185
T S K + + A +E+P + + T++++ + + ++ T +RD+
Sbjct: 1909 TMSDKKGTMSAILDAIQCITEQPVAPSASLQTTKAEKTLVKNTAESTKYTETSSTQHRDI 1968
Query: 186 QKAGKELNSDQKVA 227
Q+ GKE NSD ++
Sbjct: 1969 QQRGKEQNSDDALS 1982
>SB_22971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 126 EHKIRNLEKRKSKLTSYRDLQKAGKELNSDQ 218
+ KIRNL+K+ ++ + QKAGK+L +Q
Sbjct: 65 DKKIRNLKKKLRQIEELKTQQKAGKQLEVNQ 95
>SB_7678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1432
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +3
Query: 15 KKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKA 194
KK L ++PS N K + KD+ IR ++T I E+++ +D Q
Sbjct: 1136 KKDRTLRKLPSKENMSDGKDNLEDGKDSSIRGVLTDYNISIPAQERKRKLGRPRKDEQNL 1195
Query: 195 G-KELNSDQKVA 227
G K+ N + + A
Sbjct: 1196 GSKKKNGESQTA 1207
>SB_5871| Best HMM Match : IBR (HMM E-Value=0.00018)
Length = 843
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/78 (24%), Positives = 31/78 (39%)
Frame = +3
Query: 3 TTQSKKSCCL*RMPSAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 182
T Q +K+ L R P K Q + + EKRK +L +
Sbjct: 143 TCQQRKAVSLSRANRKKRLVCHVPTEKSGKSIMCPQRKAVSRSRAHR-EKRKKRLVCHVP 201
Query: 183 LQKAGKELNSDQKVAVAK 236
+K+GK + Q+ AV++
Sbjct: 202 TEKSGKSITCPQRKAVSR 219
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 84 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 182
ED++ IRQ+ IIE K ++E++ +L RD
Sbjct: 847 EDREDEIRQLRQIIEDKESDIEEQVMELIHLRD 879
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +3
Query: 63 SEKPASSEDKDTPIRQIMTIIEHKIRNLEK-RKSKLTSYRDLQKAGKELNSDQKVAVAKY 239
SE A ++KD + + + + KI+ + +KSK +L KAGK + + V K
Sbjct: 861 SESEAEDDEKD--VEEKHEVKQDKIKKKKHDKKSKAKDKDNLAKAGKAIQAILDVTTRKK 918
Query: 240 DEVAQPL 260
+ AQ L
Sbjct: 919 ADAAQSL 925
>SB_51986| Best HMM Match : HLH (HMM E-Value=0.15)
Length = 2110
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 84 EDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQK 221
E +D PI +I ++++ N+EK K ++D ++ GK +K
Sbjct: 208 EIEDEPINEISSLVDFVDENIEKSLLKDPLWQDEEEKGKRKKKKKK 253
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,898,884
Number of Sequences: 59808
Number of extensions: 347728
Number of successful extensions: 699
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -