Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00781
         (716 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17910.1 68418.m02100 expressed protein                             31   1.0  
At3g55990.1 68416.m06221 expressed protein contains Pfam profile...    30   1.3  
At1g11400.2 68414.m01310 expressed protein                             29   4.1  
At1g11400.1 68414.m01309 expressed protein                             29   4.1  
At5g27330.1 68418.m03263 expressed protein                             28   5.4  
At1g71150.1 68414.m08210 expressed protein  ; expression support...    28   7.1  
At5g35810.1 68418.m04303 hypothetical protein                          27   9.4  
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr...    27   9.4  
At3g06670.1 68416.m00786 expressed protein                             27   9.4  

>At5g17910.1 68418.m02100 expressed protein
          Length = 1342

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 105 RQIMTIIEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVA 251
           RQ+  + E K+ ++   +S  T   D +K   E N+D++  +AK D V+
Sbjct: 524 RQLSEVSESKVSSIPDTESVCTVLEDDEKKVDENNADRETKIAKVDMVS 572


>At3g55990.1 68416.m06221 expressed protein contains Pfam profile
           PF03005: Arabidopsis proteins of unknown function
          Length = 487

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 63  SEKPASSEDKDTPIRQIMTI-IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKY 239
           + KP    D+ TPI +I T+ ++  I+N +  +  + +   +Q + K++    +  V+K 
Sbjct: 56  TSKPHDVHDEATPITEITTLPVQESIKNSDPIQESIKNADSVQDSVKDVAEPVQEEVSKT 115

Query: 240 DEV 248
           +EV
Sbjct: 116 EEV 118


>At1g11400.2 68414.m01310 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 123 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQPL 260
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At1g11400.1 68414.m01309 expressed protein
          Length = 204

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 123 IEHKIRNLEKRKSKLTSYRDLQKAGKELNSDQKVAVAKYDEVAQPL 260
           +E +IR L K+K +LT  +  + A ++LN +Q    +K +E  Q L
Sbjct: 152 VEKRIRAL-KKKIRLTEAQQQKTASRDLNPEQLEKFSKLEEWRQEL 196


>At5g27330.1 68418.m03263 expressed protein
          Length = 628

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 87  DKDTPIRQIMTIIEHKIRNLEKRK---SKLTSYRDLQKAGKELNSDQ 218
           D++T IR +       IR LE  +   S++   RDL K+G +L S++
Sbjct: 141 DRETEIRDLKREANGLIRKLESEREEFSRVCDERDLVKSGFDLQSEE 187


>At1g71150.1 68414.m08210 expressed protein  ; expression supported
           by MPSS
          Length = 351

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 51  ANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKR 155
           ++ KS K +SSE      R++ ++IEH +  L+ R
Sbjct: 303 SDVKSSKNSSSEALSGSCRRLQSLIEHMVTELDTR 337


>At5g35810.1 68418.m04303 hypothetical protein
          Length = 347

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = -3

Query: 477 VNLAAPFVPFMKSVLASALPICIRQSRISKTSFILLVSAA*RTQASFLACFF 322
           + L A FV  +  VLA    + + + +  K S ILLV  A  T  SF+   F
Sbjct: 270 LGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALSFVVLHF 321


>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 296

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 TIIEHKIRNLEKRKSKLT-SYRDL-QKAGKELNSDQ 218
           ++++H+IRN +  K ++T  Y++L  KA  E NSD+
Sbjct: 115 SLLDHEIRNHKSSKEQITQDYKNLTSKAQLEENSDE 150


>At3g06670.1 68416.m00786 expressed protein
          Length = 865

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +3

Query: 45  SAANAKSEKPASSEDKDTPIRQIMTIIEHKIRNLEKRKSKLTSYRD 182
           SA+N + EKPAS+  K+ P   +   +     +   R   L  Y D
Sbjct: 672 SASNTQKEKPASNIQKEQPKPHLSNGVAASPTSSSPRSGGLVDYED 717


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,002,703
Number of Sequences: 28952
Number of extensions: 251860
Number of successful extensions: 587
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)