Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00780
         (801 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.8  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.8  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.8  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.7  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   3.7  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  DLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFK 152
           D+D+ N  +       +  NDYN+  N+  +GG K
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVK 76


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  DLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFK 152
           D+D+ N  +       +  NDYN+  N+  +GG K
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVK 76


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +3

Query: 48  DLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFK 152
           D+D+ N  +       +  NDYN+  N+  +GG K
Sbjct: 42  DVDEKNQILTTNAWLNLEWNDYNLKWNESEYGGVK 76


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  DLDKANYF-VQMLRAGTIWVNDYNVFGNQVPFGGFK 152
           D+D+ N   +  +     W NDYN+  N+  +GG K
Sbjct: 42  DVDEKNQLLITNIWLSLEW-NDYNLKWNESEYGGVK 76


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 48  DLDKANYF-VQMLRAGTIWVNDYNVFGNQVPFGGFK 152
           D+D+ N   +  +     W NDYN+  N+  +GG K
Sbjct: 42  DVDEKNQLLITNIWLSLEW-NDYNLKWNESEYGGVK 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,653
Number of Sequences: 336
Number of extensions: 3228
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)