Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00780
         (801 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    92   1e-19
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe...    74   2e-14
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    64   3e-11
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc...    60   4e-10
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo...    55   1e-08
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha...    54   2e-08
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||...    27   2.3  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    27   2.3  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    27   3.1  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    27   3.1  
SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr ...    26   5.4  

>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 91.9 bits (218), Expect = 1e-19
 Identities = 41/75 (54%), Positives = 52/75 (69%)
 Frame = +3

Query: 6   NNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGPY 185
           NNS YGLAA V T ++  A      L AGT+WVN YN+  +Q+PFGG+K+SG+GRE G Y
Sbjct: 423 NNSTYGLAAGVHTNNITNAIKVSNALEAGTVWVNCYNLLHHQIPFGGYKESGIGRELGSY 482

Query: 186 GLRNYLEVKAVVVKL 230
           GL NY + KAV + L
Sbjct: 483 GLTNYTQTKAVHINL 497


>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 74.1 bits (174), Expect = 2e-14
 Identities = 35/79 (44%), Positives = 48/79 (60%)
 Frame = +3

Query: 3   ANNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGP 182
           ANN+ YGLAA  FTKDL++A+     L AG +++N       Q PFGG K SG+G E G 
Sbjct: 417 ANNTTYGLAAMCFTKDLERAHRVSDELEAGMVFINSTENSDIQAPFGGIKMSGIGNELGS 476

Query: 183 YGLRNYLEVKAVVVKLADK 239
            G+  Y ++KAV +   +K
Sbjct: 477 NGIEMYTQIKAVHINFNNK 495


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
 Frame = +3

Query: 3   ANNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFG-NQVPFGGFKQSGLGRENG 179
           AN +E+GL A+VF +D     YF   L  G + VND+  F   Q+PFGG K+SG GR  G
Sbjct: 395 ANGTEFGLGASVFGRDKQLCQYFTDNLETGMVAVNDFGAFYLLQMPFGGCKKSGYGRFAG 454

Query: 180 PYGLRNYLEVKAV 218
             GLR     KA+
Sbjct: 455 YEGLRGICNSKAI 467


>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 60.1 bits (139), Expect = 4e-10
 Identities = 28/74 (37%), Positives = 43/74 (58%)
 Frame = +3

Query: 3   ANNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGP 182
           AN+S  GLA  +F+KD+ +     + L+ G +  N   V     PFGG K+SG GRE   
Sbjct: 422 ANDSPVGLAGYLFSKDISRVFRVGEALQVGMVGCNTGLVSDVLSPFGGVKESGFGREGSK 481

Query: 183 YGLRNYLEVKAVVV 224
           YG+  YL++K++ +
Sbjct: 482 YGISEYLDIKSLTI 495


>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 500

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 25/72 (34%), Positives = 43/72 (59%)
 Frame = +3

Query: 3   ANNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGP 182
           AN+SEYGL + VF+ +     +F   + AG   +N+Y+V  +++P+ G+K SGLG     
Sbjct: 424 ANDSEYGLGSGVFSTNPKTLEFFSNNIEAGMCSLNNYHVVTHELPWIGWKHSGLGVGLSK 483

Query: 183 YGLRNYLEVKAV 218
           +G   Y+ +K +
Sbjct: 484 HGYNEYMRLKQI 495


>SPAC139.05 |||succinate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 493

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 28/75 (37%), Positives = 42/75 (56%)
 Frame = +3

Query: 3   ANNSEYGLAAAVFTKDLDKANYFVQMLRAGTIWVNDYNVFGNQVPFGGFKQSGLGRENGP 182
           AN+S+ GLA  VFT +L    +  + L  G +  N   V    + FGG KQSG G+E G 
Sbjct: 417 ANDSDVGLAGYVFTNNLSTMIHVAKELEVGLVGANIEMVDEPFISFGGIKQSGFGKEAGR 476

Query: 183 YGLRNYLEVKAVVVK 227
            G++ ++ VK + +K
Sbjct: 477 LGVQEFMVVKEINLK 491


>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 462

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 99  WVNDYNVFGNQVPFGGFKQSGLGRENGPYGLRNYLEVKAVVVKLADKN 242
           W+ D      +  FGG+K S L R+ G   L N L ++     +A+KN
Sbjct: 269 WLRDAETAVVEEWFGGYKVSKLMRQLGAGSLLNDLSMRMENFVVAEKN 316


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 478 PKSQAGLGQASFFMFLCIFFNELSIIMH 395
           PKS+ G+   +  + LCIFF   S + H
Sbjct: 29  PKSRTGIALYASLILLCIFFTIFSTMSH 56


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 16  STDWPPLSSLKI*TRPTTSYRCCAPAPFGLTTTTYSGT 129
           ST  PP +++ I T PTT+       P G  TTT +GT
Sbjct: 185 STSCPPPTTILIVTVPTTTTTTTVGYP-GSVTTTLTGT 221


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 566 YLKVSLTYLTTKQCQPYRKIYCPHM 492
           +L  SLT L  K C P   I CP++
Sbjct: 391 FLPQSLTTLIVKPCNPASTILCPYL 415


>SPBC16C6.12c |||Las1-like protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 12  SEYGLAAAVFTKDLDKANYFVQMLRAGT 95
           S+Y +  AV  K +D   YFV++  A T
Sbjct: 94  SQYAIPMAVLAKSIDLPTYFVELRHAIT 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,635
Number of Sequences: 5004
Number of extensions: 52005
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)