Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00779
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 141 9e-35
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 67 3e-12
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 67 3e-12
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 66 4e-12
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 61 2e-10
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 60 4e-10
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 53 4e-08
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 43 4e-05
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 42 1e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 42 1e-04
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 40 5e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 39 7e-04
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 38 0.001
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 38 0.002
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 36 0.005
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.025
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 29 0.96
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 28 1.3
SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb... 27 3.9
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 27 3.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.9
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 27 3.9
SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces po... 26 5.1
SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein L10... 26 5.1
SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr 2|... 25 8.9
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 8.9
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 8.9
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 141 bits (342), Expect = 9e-35
Identities = 61/84 (72%), Positives = 76/84 (90%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 688
DCPGHADYIKNMITG A MDGAI+VV+ATDG MPQTREHLLLA+Q+G++ +VV+INKVD
Sbjct: 122 DCPGHADYIKNMITGAATMDGAIIVVSATDGQMPQTREHLLLARQVGVKQIVVYINKVDM 181
Query: 689 ADEEMVELVEMEIRELMTEMGYDG 760
+ +M+ELVEME+REL++E G+DG
Sbjct: 182 VEPDMIELVEMEMRELLSEYGFDG 205
Score = 126 bits (303), Expect = 5e-30
Identities = 57/82 (69%), Positives = 65/82 (79%)
Frame = +3
Query: 261 RHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEK 440
R YA++++F R KPH N+GTIGHVDHGKTTLTAAITK LSDL A Y+ ID APEEK
Sbjct: 39 RTYADEKVFVRKKPHVNIGTIGHVDHGKTTLTAAITKCLSDLGQASFMDYSQIDKAPEEK 98
Query: 441 ARGITINVAHVEYQTEQRHYGH 506
ARGITI+ AHVEY+T RHY H
Sbjct: 99 ARGITISSAHVEYETANRHYAH 120
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTREHLLLAKQIGIQHVVV 667
D PGH D+IKNMITGT+Q D AIL++ G QTREH LLA +G++ ++V
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Query: 668 FINKVDAA--DEEMVELVEMEIRELMTEMGYD 757
+NK+D + E + E + ++G++
Sbjct: 151 AVNKMDTTGWSQARFEEIVKETSNFIKKVGFN 182
Score = 33.1 bits (72), Expect = 0.044
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Frame = +3
Query: 291 RTKPHCNVGTIGHVDHGKTTLTAAI---------------TKVLSDLNLAQKKGYADIDN 425
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 426 APEEKARGITINVAHVEYQT 485
E+ RGITI++A +++T
Sbjct: 63 LKAERERGITIDIALWKFET 82
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 66.9 bits (156), Expect = 3e-12
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTREHLLLAKQIGIQHVVV 667
D PGH D+IKNMITGT+Q D AIL++ G QTREH LLA +G++ ++V
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Query: 668 FINKVDAA--DEEMVELVEMEIRELMTEMGYD 757
+NK+D + E + E + ++G++
Sbjct: 151 AVNKMDTTGWSQARFEEIVKETSNFIKKVGFN 182
Score = 33.1 bits (72), Expect = 0.044
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Frame = +3
Query: 291 RTKPHCNVGTIGHVDHGKTTLTAAI---------------TKVLSDLNLAQKKGYADIDN 425
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 426 APEEKARGITINVAHVEYQT 485
E+ RGITI++A +++T
Sbjct: 63 LKAERERGITIDIALWKFET 82
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 66.5 bits (155), Expect = 4e-12
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTREHLLLAKQIGIQHVVV 667
D PGH D+IKNMITGT+Q D A+L++ G QTREH LLA +G++ ++V
Sbjct: 91 DAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIV 150
Query: 668 FINKVDAA--DEEMVELVEMEIRELMTEMGYD 757
+NK+D + E + E + ++G++
Sbjct: 151 AVNKMDTTGWSQARFEEIVKETSNFIKKVGFN 182
Score = 33.1 bits (72), Expect = 0.044
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 15/80 (18%)
Frame = +3
Query: 291 RTKPHCNVGTIGHVDHGKTTLTAAI---------------TKVLSDLNLAQKKGYADIDN 425
+ K H NV IGHVD GK+T T + K ++L K +D
Sbjct: 3 KEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDK 62
Query: 426 APEEKARGITINVAHVEYQT 485
E+ RGITI++A +++T
Sbjct: 63 LKAERERGITIDIALWKFET 82
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 60.9 bits (141), Expect = 2e-10
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTREHLLLAKQIGIQHVVV 667
D PGH Y+ NMI G +Q D +LV++A G QTREH +LA+ GI H+VV
Sbjct: 322 DAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVV 381
Query: 668 FINKVDAADEEMVELVEMEIRELMTEM 748
INK+ DE V+ E +E + ++
Sbjct: 382 VINKM---DEPSVQWSEERYKECVDKL 405
Score = 35.5 bits (78), Expect = 0.008
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Frame = +3
Query: 297 KPHCNVGTIGHVDHGKTTLTAAI------------TKVLSDLNLAQKKGYA---DIDNAP 431
K H N+ IGHVD GK+TL I K+ + A K+ + +D+
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 432 EEKARGITINVAHVEYQTEQRHY 500
EE+ +G T+ V ++TE R +
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRF 318
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 59.7 bits (138), Expect = 4e-10
Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +2
Query: 452 HY*CGSCRIP-NRTEALWTHDCPGHADYIKNMITGTAQMDGAILVVAATDGV-MPQTREH 625
H C C P N + DCPGH + M+ G A MD A+L++A + PQT EH
Sbjct: 94 HPPCEICNSPMNLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEH 153
Query: 626 LLLAKQIGIQHVVVFINKVDAADEEMVE 709
L + + ++H+++ NKVD E E
Sbjct: 154 LAAIEIMQLKHIIILQNKVDLIRESAAE 181
Score = 35.1 bits (77), Expect = 0.011
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD 416
N+GTIGHV HGK+T+ AI+ V + + N+ K GYA+
Sbjct: 25 NIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYAN 67
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATD-----GVMP--QTREHLLLAKQIGIQHVVV 667
D PGH D+I MI G + D A+LVV ++ G + QTREH L + +GI +VV
Sbjct: 261 DAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV 320
Query: 668 FINKVD 685
+NK+D
Sbjct: 321 SVNKLD 326
Score = 41.1 bits (92), Expect = 2e-04
Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 17/126 (13%)
Frame = +3
Query: 174 EISSEAKPVCKCTKHNSPVRIDSIKYNLKRHYAEKQIFERT--KPHCNVGTIGHVDHGKT 347
+ + E K N P + K N + +IFE++ KP ++ GHVD GK+
Sbjct: 132 QTNGEVKMKNSSESDNQPEKKKIKKQNPTDLVSVPEIFEQSNPKPVVHLVVTGHVDSGKS 191
Query: 348 TLTAAITKVLSDLN--LAQK---------KG---YA-DIDNAPEEKARGITINVAHVEYQ 482
T+ I L ++N QK KG YA +D EE+ARG+T++VA ++
Sbjct: 192 TMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFE 251
Query: 483 TEQRHY 500
++++ Y
Sbjct: 252 SDKKIY 257
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGHAD+ + A +DGA+ ++ + GV QT+ A + GI V+F+NK+D
Sbjct: 99 DTPGHADFTFEVERSVAVLDGAVAIIDGSAGVEAQTKVVWKQATKRGIPK-VIFVNKMD 156
Score = 39.5 bits (88), Expect = 5e-04
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYAD-----IDNAPEEKARGITINVAHV 473
NVG I H+D GKTTLT K+L G D +D P E+ RGITIN A +
Sbjct: 30 NVGIIAHIDAGKTTLT---EKMLYYGGFTSHFGNVDTGDTVMDYLPAERQRGITINSAAI 86
Query: 474 EY 479
+
Sbjct: 87 SF 88
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 688
D PGH D+ + DGA++VV +GV QT L A I+ VVV +NKVD
Sbjct: 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVV-VNKVDR 162
Query: 689 A 691
A
Sbjct: 163 A 163
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 458
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTI 70
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 41.5 bits (93), Expect = 1e-04
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 688
D PGH D+ + DGA++VV +GV QT L A I+ VVV +NKVD
Sbjct: 104 DSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIRPVVV-VNKVDR 162
Query: 689 A 691
A
Sbjct: 163 A 163
Score = 40.7 bits (91), Expect = 2e-04
Identities = 18/50 (36%), Positives = 30/50 (60%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 458
N+ I HVDHGK+TLT ++ + ++ A+ +D +E+ RG+TI
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTI 70
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 39.5 bits (88), Expect = 5e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Frame = +2
Query: 485 RTEALWTHDCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVV 664
+T A D PGH D++ + A DG +LVV +GVM T ++ + +V
Sbjct: 207 KTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVVDVIEGVMINT-TRIIKHAILHDMPIV 265
Query: 665 VFINKVD 685
+ +NKVD
Sbjct: 266 LVLNKVD 272
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGH D+ ++ A +G IL+V A+ G+ QT + +A + ++ +NKVD
Sbjct: 130 DTPGHVDFRAEVMHSLAACEGCILLVDASQGIQAQTLSNFYMAFSQNLV-IIPVLNKVD 187
Score = 35.5 bits (78), Expect = 0.008
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 458
N I H+DHGK+TL+ I K+ +N + +D E+ RGIT+
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQF-LDKLEVERRRGITV 108
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQH--VVVFINKV 682
D PGH D+ + + + DGA ++V A +GV QT + + +Q I V++ INK+
Sbjct: 100 DSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQT---ITVLRQAWIDRIKVILVINKM 156
Query: 683 DAADEEM 703
D E+
Sbjct: 157 DRLITEL 163
Score = 29.1 bits (62), Expect = 0.72
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 458
N + HVDHGKTTL ++ ++ +D +E RGIT+
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRGITM 70
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 37.5 bits (83), Expect = 0.002
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV--VVFINKV 682
D PGH D+ + +DGA+LV+ A GV QT + + +Q+ +V + F+NK+
Sbjct: 151 DTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQT---ITVDRQMRRYNVPRISFVNKM 207
Query: 683 D 685
D
Sbjct: 208 D 208
Score = 32.3 bits (70), Expect = 0.078
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Frame = +3
Query: 288 ERTKPHCNVGTIGHVDHGKTTLTAAI---TKVLSDLNLAQKKGY--ADIDNAPEEKARGI 452
+R K N+G H+D GKTT T + T + D++ + K A +D E+ +GI
Sbjct: 54 KRLKQIRNIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGI 113
Query: 453 TINVA 467
TI A
Sbjct: 114 TIQSA 118
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 36.3 bits (80), Expect = 0.005
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGH + GT+ + AILV+ G+ PQT E + L + VV +NKVD
Sbjct: 555 DTPGHESFTNLRSRGTSLCNIAILVIDIMHGLEPQTIESIRLLRDQKTPFVVA-LNKVD 612
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.025
Identities = 22/59 (37%), Positives = 28/59 (47%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGH + G D +LVVA DGV PQT E + + + VVV + K D
Sbjct: 226 DTPGHMAFEAMRKRGANIADIVVLVVAGDDGVKPQTVEAIKHIQSADVP-VVVALTKSD 283
Score = 29.9 bits (64), Expect = 0.41
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +3
Query: 312 VGTIGHVDHGKTTLTAAITK 371
V +GHVDHGKTTL A K
Sbjct: 174 VTLMGHVDHGKTTLLDAFRK 193
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 28.7 bits (61), Expect = 0.96
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
Frame = +3
Query: 174 EISSEAKPVCKCTKHNS-PVRIDSIKYNLKRHYAEKQIFERTKPHCNVGTIGHVDHGKTT 350
EI E +P C+ + S KY +A I P +G +G GK+T
Sbjct: 1209 EIIPENRPPCEWPTDGAVSFNHYSAKYREDLSFALNNINIEISPREKIGIVGRTGAGKST 1268
Query: 351 LTAAITKVLSDLNLAQKKGYADIDN 425
L A+ +++ +G +IDN
Sbjct: 1269 LAMALFRIIE-----PTEGKIEIDN 1288
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +3
Query: 240 SIKYNLKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVL 377
S++Y I KP +G +G GK+TLT A+ +++
Sbjct: 1230 SVRYRENLPLVLNDISVNIKPQEKIGIVGRTGAGKSTLTLALFRLI 1275
>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 505
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 336 DQHVRLCQHCNGALYVQRFVFLHN 265
D H+R+ G Y++RFV HN
Sbjct: 475 DYHIRITFLAKGTEYIERFVKAHN 498
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 196 QCANVRNTTVLSGLTPLSIISRDIMQKNK-SLNVQSPIAMLAQSDMLITGRLH 351
+C+N N L TPL+++ D + S A L SD ++TG H
Sbjct: 257 RCSNAVNCVQLFDETPLALVCTDSKDAMLIDIRSNSVSAKLPHSDSVLTGSWH 309
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 3.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -3
Query: 697 LISGIHFVYEHHHMLNTNLF 638
LIS + F+ EHH + +NLF
Sbjct: 527 LISSLAFLLEHHEVYGSNLF 546
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 26.6 bits (56), Expect = 3.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQ 562
D HADY K MITG A+
Sbjct: 715 DMHSHADYFKEMITGYAK 732
>SPAC2H10.02c |||26S proteasome regulator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 213
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = +3
Query: 180 SSEAKPVCKCTKHNSPVRIDSIKYNLKRHYAEKQIFERTKPHCNVGTI 323
S A K + P+ ++ YN+ + +I R KP C V ++
Sbjct: 88 SLAANDETKLAQEADPLNFNAANYNMNDIISRSKILGRVKPFCVVDSV 135
>SPBC30D10.18c |rpl102|rpl1-2, rpl10a-2|60S ribosomal protein
L10a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 5.1
Identities = 20/72 (27%), Positives = 29/72 (40%)
Frame = +3
Query: 204 KCTKHNSPVRIDSIKYNLKRHYAEKQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSD 383
K K SPV Y F+ K C +GHVD + L A ++ ++
Sbjct: 129 KAGKFPSPVSHSDDLYGKIIEVKSTIKFQLKKVLCLGVAVGHVDMAEEQLAANLSLAINF 188
Query: 384 LNLAQKKGYADI 419
L KKG+ +I
Sbjct: 189 LVSLLKKGWQNI 200
>SPBP8B7.22 |erd2||HDEL receptor|Schizosaccharomyces pombe|chr
2|||Manual
Length = 212
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 24/37 (64%)
Frame = -2
Query: 131 MLNELFNTKRC*ILNFQKFRLIFVWIFYNKYIHLFFR 21
+L+ + +K C L+ K L+F+ ++ +Y++LF+R
Sbjct: 19 LLHRMKKSKTCSGLSL-KSHLLFLLVYVTRYLNLFWR 54
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 351 LTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTEQRHYG 503
+ A IT S + L I N+ +K + N++H + T RH+G
Sbjct: 529 ILAKITCFCSSIGLTVSPTKTKITNSYTDKILFLGTNISHSKNVTFSRHFG 579
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 175 KLVLKQSQCANVRNTTVLSGLTPLSIISRDIMQKNKS 285
KL+ +C N++ T+ L S S+++ K KS
Sbjct: 339 KLIPINCECLNIKAYTLFVSLRKYSFSSKNVQSKEKS 375
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,078,505
Number of Sequences: 5004
Number of extensions: 62203
Number of successful extensions: 212
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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