Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00779
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 66 2e-11
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 66 4e-11
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 56 2e-08
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 46 3e-05
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 42 7e-04
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 39 0.004
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 39 0.005
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 39 0.005
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 38 0.007
SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068) 31 0.77
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 31 0.77
SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10) 31 1.0
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 30 2.4
SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24) 29 3.1
SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25) 29 3.1
SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5) 29 4.1
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Frame = +2
Query: 464 GSCRIPNRTEALWTHDCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTRE 622
G R + + + D PGH D+I NMITG AQ D AILVV A G QTRE
Sbjct: 4 GLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTRE 63
Query: 623 HLLLAKQIGIQHVVVFINKVD 685
H +L + +G+ ++V INK+D
Sbjct: 64 HAILVRSLGVTQLIVAINKLD 84
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 65.7 bits (153), Expect = 4e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 11/94 (11%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMP-------QTREHLLLAKQIGIQHVVV 667
D PGH ++ NMI+G Q D +LV++A G QTREH +LAK G++H+V+
Sbjct: 228 DAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHLVI 287
Query: 668 FINKVDAA----DEEMVELVEMEIRELMTEMGYD 757
+NK+D +EE E +++++ + ++G++
Sbjct: 288 LVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFN 321
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGV-MPQTREHLLLAKQIGIQHVVVFINKVD 685
DCPGH + M+ G A MD A+L++A + PQT EHL + + ++H+++ NK+D
Sbjct: 70 DCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILILQNKID 129
Query: 686 AADEEMVE 709
E +
Sbjct: 130 LVKESQAK 137
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 7/40 (17%)
Frame = +3
Query: 318 TIGHVDHGKTTLTAAITKVLS-------DLNLAQKKGYAD 416
TIGHV HGK+T+ A++ V + + N+ K GYA+
Sbjct: 27 TIGHVAHGKSTVVKALSGVQTVRFKNELERNITIKLGYAN 66
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 46.0 bits (104), Expect = 3e-05
Identities = 24/59 (40%), Positives = 33/59 (55%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGH + G D I+VVAA D VMPQT+E + A+ G+ ++ INK+D
Sbjct: 144 DTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMPQTKEAISHAQAAGVP-IIFAINKID 201
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 41.5 bits (93), Expect = 7e-04
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 688
D PGH D+ ++ +D I+V+ GV QT + + + + I ++VFINK+D
Sbjct: 85 DTPGHKDFAEDTFRTLTAVDSVIVVIDVAKGVEEQTEKLVEVCRMRNIP-MIVFINKMDR 143
Query: 689 ADEEMVELVE 718
++ +L++
Sbjct: 144 EGKDAFDLLD 153
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGHA + G D +LVVAA DGV QT E + A + ++V INK+D
Sbjct: 82 DTPGHAAFNSMRARGANVTDIVVLVVAADDGVKTQTVESIRHAMHAKVP-LIVAINKID 139
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +3
Query: 291 RTKPHCNVGTI-GHVDHGKTTLTAAI 365
R P V TI GHVDHGKTTL A+
Sbjct: 23 RLMPRPPVVTIMGHVDHGKTTLLDAL 48
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 39.1 bits (87), Expect = 0.004
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQ 482
N+G +GHVD GKT+L A++ S A D P+ + RGIT+++ +Q
Sbjct: 37 NIGVLGHVDSGKTSLAKALSTTAST---------ASFDKNPQSQERGITLDLGFSSFQ 85
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDG 571
DCPGHA IK +I G AQ+ G
Sbjct: 108 DCPGHASLIKTII-GGAQIIG 127
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 39.1 bits (87), Expect = 0.004
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITINV-AHVEYQT 485
N + HVDHGK+TL + +V ++ + +D E+ RGIT+ HV++
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNKQV-LDKLQVERERGITVKAQGHVDFSY 2001
Query: 486 E-QRHYGHTTAQVMLTTLRT*LQAQ 557
E R V+L +QAQ
Sbjct: 2002 EVSRSLAACQGVVLLVDAAQGVQAQ 2026
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 38.7 bits (86), Expect = 0.005
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQM 565
D PGH D+IKNMITGT+QM
Sbjct: 43 DAPGHRDFIKNMITGTSQM 61
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/61 (37%), Positives = 31/61 (50%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDA 688
D PGH D+ + DGA++VV GV QT L A I+ V+F+NK+D
Sbjct: 105 DSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIK-PVLFMNKMDR 163
Query: 689 A 691
A
Sbjct: 164 A 164
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 309 NVGTIGHVDHGKTTLTAAITKVLSDLNLAQKKGYADIDNAPEEKARGITI 458
N+ I HVDHGK+TLT ++ + A+ D +E+ R ITI
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITI 69
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/59 (40%), Positives = 31/59 (52%)
Frame = +2
Query: 509 DCPGHADYIKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVD 685
D PGH + G++ D AILVV G+ PQT E + L K+ VV +NKVD
Sbjct: 684 DTPGHESFSNLRSRGSSLCDMAILVVDIMHGLEPQTIESINLLKKRKTPFVVA-LNKVD 741
>SB_19307| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.068)
Length = 173
Score = 31.5 bits (68), Expect = 0.77
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +2
Query: 575 ILVVAATDGVMPQTREHLLLAKQIGIQHVVVFINKVDAADEE 700
+LVV T GV QT E L++ +I Q +VV +NKVD E
Sbjct: 3 MLVVDVTKGVQTQTAECLVIG-EILCQKMVVVLNKVDLLKPE 43
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 31.5 bits (68), Expect = 0.77
Identities = 11/24 (45%), Positives = 20/24 (83%)
Frame = +3
Query: 171 CEISSEAKPVCKCTKHNSPVRIDS 242
C++S+EAKP + +++ SPVR+D+
Sbjct: 1953 CKLSAEAKPTFEWSRNGSPVRLDN 1976
>SB_35448| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-10)
Length = 563
Score = 31.1 bits (67), Expect = 1.0
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 533 IKNMITGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV--VVFINKVDAADEEM 703
++ + T DGA++VV +GV PQT H++L +Q ++++ + +NK+D E+
Sbjct: 91 LEQVSTAVRLCDGALVVVDVVEGVSPQT--HVVL-RQAWLENIRPCLVLNKIDRLITEL 146
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Frame = +2
Query: 548 TGTAQMDGAILVVAATDGVMPQTREHLLLAKQIGIQHV--VVFINKVDAADEEM 703
T DGA++VV +GV PQT H++L +Q ++++ + +NK+D E+
Sbjct: 26 TAVRLCDGALVVVDVVEGVSPQT--HVVL-RQAWLENIRPCLVLNKIDRLITEL 76
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 291 RTKPHCNVGTIGHVDHGKTTLT 356
+ K H N+ IGHVD GK+T T
Sbjct: 3 KEKIHINIVVIGHVDSGKSTTT 24
>SB_38838| Best HMM Match : ABC_tran (HMM E-Value=0.24)
Length = 169
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +3
Query: 228 VRIDSIKYNLKRHYAE--KQIFERTKPHCNVGTIGHVDHGKTTLTAAITKVLSDLN 389
+R + + + RH A + R P VG +GH GKTT I + L D+N
Sbjct: 66 IRFEDVTFRYGRHEAPLYDRFSARIAPGERVGLVGHSGSGKTTFIKLIQR-LYDVN 120
>SB_25549| Best HMM Match : WD40 (HMM E-Value=0.25)
Length = 506
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +2
Query: 518 GHADYIKNMITGTAQMDGAILVVAAT 595
GHADYI +MIT TA +G++ V +A+
Sbjct: 434 GHADYISHMITTTAD-NGSVTVWSAS 458
>SB_25250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 413
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 366 TKVLSDLNLAQKKGYADIDNAPEEKARGITINVAHVEYQTE 488
T +L D + +K Y +D++ EKA GI ++ +H E T+
Sbjct: 97 TYILLDDSHGEKTAYILLDDSHAEKATGILLDDSHAEKATD 137
>SB_19972| Best HMM Match : Sod_Fe_N (HMM E-Value=5)
Length = 293
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 511 LPRSC*LH*EHDYRHSTNGWCYISSSCN 594
L RSC H D H + GWC ++ SCN
Sbjct: 37 LARSCNGH--TDLHHCSIGWCILARSCN 62
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,111,653
Number of Sequences: 59808
Number of extensions: 481487
Number of successful extensions: 1225
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -