Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00778
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 32 0.091
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 29 0.64
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 28 1.1
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 26 4.5
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 25 7.9
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 25 7.9
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 25 7.9
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 31.9 bits (69), Expect = 0.091
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 311 NAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTA 490
NA SAPST++ ++ + N+ S S ++ +G+T+T N G+ P + G+T +A
Sbjct: 58 NASNTSAPSTFSFGKAATTGNSTNASTSSPFS-FGSTNTNNT-AGAKP-LFGGLGSTGSA 114
Query: 491 NA 496
N+
Sbjct: 115 NS 116
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +1
Query: 514 STYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPSTYA 645
ST G + NA SAPST++ A+T N+ + ST S ++
Sbjct: 46 STAPSGGLFGSNNASNTSAPSTFSFGKAATTGNSTNASTSSPFS 89
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 326 SAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTA 490
S PS+ + + S+S++ +A +T Y T T +A + SSP Y+ T+
Sbjct: 304 SVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPTS 358
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +2
Query: 326 SAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTA 490
S PS+ + + S++++ +A +T Y T T +A + SSP Y+ T+
Sbjct: 358 SVPSSVSSFTSSNSSYTTTLTASNTSITYTGTGTGSATFTSSPPFYSNSSVIPTS 412
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 326 SAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTA 490
S PS+ + + S++++ +A +T + T T +A + SSP Y+ T+
Sbjct: 412 SVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPFYSNSSVIPTS 466
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = -3
Query: 317 RHWELWWSHILHR-WRRWSHISISDDE 240
R+ E W LH+ W +W HISI + +
Sbjct: 135 RNVEQKWIQFLHKSWMKWLHISIQESQ 161
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 4.5
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 305 TPNAWYWSAPSTYAR--YRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGT 478
T ++S S Y Y +T + Y PS+ T T + ++P+T A Y T
Sbjct: 107 TKTITFFSGTSDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPTNPTTTAIYST 166
Query: 479 TSTAN 493
+ ++N
Sbjct: 167 SGSSN 171
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/59 (23%), Positives = 38/59 (64%)
Frame = +2
Query: 320 YWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTANA 496
Y SA ++Y +++ ++ + S+ ++ ++ ++S++ + GSS S+ +R G+TS++ +
Sbjct: 503 YSSASASYPSTSMSASLSSVHTSSATSSSKSSSSSSSRS--GSSSSSSSRSGSTSSSGS 559
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 586 RYGTASTANARDGSTPSTYARHNPYATCNARCTPPPGM 699
+YG+ + AN RD P NP +PPPG+
Sbjct: 554 KYGSDNIANVRDIYVPLEMKEENPNLEIQ---SPPPGV 588
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +3
Query: 63 RSSSSFTTSYAREATAPTSHARNICRHCIRCKQK*SKPTYIFNICYGST 209
R S+S + + ++ TS A N+ C C Q S+P+ + Y T
Sbjct: 443 RHSTSRKIAQSHTGSSSTSSAANVRYRCTECLQGFSRPSSLKIHTYSHT 491
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/43 (30%), Positives = 19/43 (44%)
Frame = +2
Query: 293 GTTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTT 421
GTT W++ PS + R +T A A + + GTT
Sbjct: 405 GTTDVTRTWHFGEPSEFERQTATLALKGHIALANIVFPK-GTT 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,679
Number of Sequences: 5004
Number of extensions: 47235
Number of successful extensions: 156
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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