Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00778
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0462 + 34113877-34114463,34117294-34117466,34118049-341182... 39 0.004
01_01_0539 + 3952039-3952219,3952295-3952984,3953115-3953191,395... 31 1.2
11_04_0449 - 17842722-17842762,17842854-17842906,17843041-178431... 30 2.0
10_08_0242 - 16120554-16121129 29 2.7
04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354... 29 2.7
09_01_0025 - 441528-444284 29 3.5
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 29 4.7
12_02_0658 + 21608474-21609401,21609996-21610012 28 6.2
12_01_0264 - 1929022-1930212 28 6.2
11_01_0266 - 2010572-2011879 28 6.2
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799 28 6.2
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 28 6.2
07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446 28 6.2
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572... 28 6.2
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 28 6.2
08_02_0186 + 13965960-13966424 28 8.2
>03_06_0462 +
34113877-34114463,34117294-34117466,34118049-34118233,
34118865-34118957
Length = 345
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Frame = +2
Query: 332 PSTYARYRSTSAANAWYGSAPSTYA-RYGTTSTANA-*YGSSPSTY-ARYGTT 481
P+TY +T A A YG++ +TYA YG T A A YGSS + Y A YG +
Sbjct: 256 PTTYGNSEATYPAPAAYGNSETTYAPTYGNTEAAYASTYGSSEAAYAAAYGNS 308
Score = 31.5 bits (68), Expect = 0.67
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +1
Query: 511 PSTYARYGTTSTANAWYGSAPSTYA-RYGTASTANARD-GSTPSTYA 645
P+TY T A A YG++ +TYA YG A A GS+ + YA
Sbjct: 256 PTTYGNSEATYPAPAAYGNSETTYAPTYGNTEAAYASTYGSSEAAYA 302
>01_01_0539 +
3952039-3952219,3952295-3952984,3953115-3953191,
3953356-3953931
Length = 507
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +1
Query: 499 VWVPPSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPSTYARHNPYATC--N 672
+WVPP Y T + A YG+ P+T Y TA+ A + +H+P A +
Sbjct: 345 IWVPPE----YATQAAGPAIYGAHPATQPHY-TAAVAAQEYYHHHHHHLQHHPAAAALVH 399
Query: 673 ARCTPPP 693
R PP
Sbjct: 400 HRAVAPP 406
>11_04_0449 -
17842722-17842762,17842854-17842906,17843041-17843118,
17843435-17843578,17843684-17843827,17843920-17843991,
17844493-17844625,17844721-17844811
Length = 251
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +3
Query: 534 DHLHRQCLVWVRPLHLCQVWD-RLHRQCKGWVH 629
D L++Q + W P ++ Q WD LH C W+H
Sbjct: 32 DILYKQKVAWEDPENVLQTWDPTLHNPCT-WMH 63
>10_08_0242 - 16120554-16121129
Length = 191
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/65 (33%), Positives = 29/65 (44%)
Frame = +2
Query: 302 TTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTT 481
T+ N +Y S+ A S A A G A + YG S + GSS +T YG
Sbjct: 100 TSQNGYYGYGGSSSA---GGSGAGAGAGQAGGYWPSYGHGSGSGTGSGSSEATNTWYGQY 156
Query: 482 STANA 496
+ ANA
Sbjct: 157 ANANA 161
>04_04_0237 +
23831949-23832354,23833970-23835166,23835274-23835453,
23835537-23835823,23835912-23836029,23836354-23836483,
23836693-23836861,23836926-23836991,23837466-23837738,
23838131-23838349
Length = 1014
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = +2
Query: 299 TTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGT 478
TT P W+ P + R++ +A A G T++ +G S N SSP + +R T
Sbjct: 108 TTVPPTWFTLQPKHHRRWKKGAAEAADCGKILLTFSLHGENSD-NTVIHSSPCSSSRSDT 166
>09_01_0025 - 441528-444284
Length = 918
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = +1
Query: 394 LHLCQIWD-HLHRQCLVWVLPLHLCQVWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSA 570
+H C W HLH CLV + HLC H R ++ V +T G + + YG
Sbjct: 265 VHAC--WSKHLHSDCLVLLDNAHLCCFDLHQRRGSVLRVGTATATEGGACLSCD--YGPQ 320
Query: 571 PST 579
P T
Sbjct: 321 PWT 323
>10_08_0568 +
18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -3
Query: 347 WHMWRGRTNTRHW----ELWWSHILHRWRRWSHISISDDE 240
W+ W N R W +LWW H + W ++++ DDE
Sbjct: 504 WYRWL--ENIRDWCISRQLWWGHRIPAW----YVTLEDDE 537
>12_02_0658 + 21608474-21609401,21609996-21610012
Length = 314
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/56 (33%), Positives = 24/56 (42%)
Frame = +2
Query: 191 YLLWVHLCHHPCQAWNLRHRXXXXXXXXXXXARYGTTTTPNAWYWSAPSTYARYRS 358
YLL C HP +AW L +GT T P+A PST ++Y S
Sbjct: 252 YLLAKPKCFHP-KAWVLA--LDTRSSTLLGVVEFGTETAPSAGVTYRPSTISKYMS 304
>12_01_0264 - 1929022-1930212
Length = 396
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 182 HLQYLLWVHLCHHPCQAWNLR 244
HL+ W+ L H PC W LR
Sbjct: 174 HLEGCSWIKLPHPPCFPWKLR 194
>11_01_0266 - 2010572-2011879
Length = 435
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 182 HLQYLLWVHLCHHPCQAWNLR 244
HL+ W+ L H PC W LR
Sbjct: 237 HLEGCSWIKLPHPPCFPWKLR 257
>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
Length = 293
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Frame = +1
Query: 469 VWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPST--- 639
V DHL + +PP + T + S+ R G A STPST
Sbjct: 198 VVDHLRGGKVRELPPPSSLTPSTAGELGN-HRRCQSSPIRGGRAQEMPTLSSSTPSTVGG 256
Query: 640 ---YARHNPYATCNARCTPPPGM 699
+ RH PY + R PP M
Sbjct: 257 LGSHCRHRPYPIRSGRARSPPSM 279
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +1
Query: 574 STYARYGTASTANARDGSTPSTYARHNPYATCNARCTPPPG 696
+T A YG + +T + + RH P TC PP G
Sbjct: 726 ATAAVYGDVGNQGSPSVATTTKHPRHRPGCTCIVCIQPPSG 766
>07_01_0164 + 1154942-1155124,1155193-1155199,1155900-1157446
Length = 578
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +3
Query: 531 WDHLHRQCLVWVRPLHLCQVWDRLHRQC-KGWVHPLHLC 644
WD +HR W RP LC H+ C G++ + C
Sbjct: 346 WDSIHRVATEWFRPNPLC--CKHGHKVCSSGYMDKIEFC 382
>03_02_0120 -
5728572-5728712,5728812-5728916,5729178-5729441,
5729809-5729958,5730070-5730150,5730481-5730597,
5730679-5730831,5731426-5731569,5731773-5731802,
5732070-5732430,5732682-5732849,5733371-5733600,
5734088-5734194,5734275-5734623
Length = 799
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Frame = +1
Query: 502 WVPPSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPSTYARHNPYA 663
+ P +TY YGT ++ SAP A YG T TYA+ + A
Sbjct: 715 YAPQATYPAYGTYDYSHQMPQSAPQA-AAYGAYPPTYPAQAYTQQTYAQPSAMA 767
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 511 PSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPSTYARHNP 657
P+++ T+ GS+ GTA+TA S PST + H P
Sbjct: 466 PNSFGGVDQTTKKRKKPGSSSGRANSSGTANTAGPSPSSAPSTPSTHTP 514
>08_02_0186 + 13965960-13966424
Length = 154
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 601 STANARDGSTPSTYARHNPYATCNARCTPPPG 696
+T + DG+T + +NP C PPPG
Sbjct: 28 ATGGSGDGATGNNNNNNNPTICSGEGCQPPPG 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,760,542
Number of Sequences: 37544
Number of extensions: 349673
Number of successful extensions: 1157
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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