Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00778
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14331-7|AAN65310.1| 510|Caenorhabditis elegans Hypothetical pr... 36 0.028
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 34 0.085
U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical p... 33 0.26
Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical p... 30 1.4
Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical p... 30 1.4
U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid elon... 29 2.4
Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical pr... 29 3.2
U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical pr... 29 3.2
U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical... 29 4.2
>L14331-7|AAN65310.1| 510|Caenorhabditis elegans Hypothetical
protein K12H4.7a protein.
Length = 510
Score = 35.9 bits (79), Expect = 0.028
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 290 YGTTTTPNAWYWSAPSTYARYRSTSAANA--WYGSAPSTYARYGTTSTANA*YGSSPSTY 463
+G + AW W + + Y+STS+A A W+G + A+Y A YG++ ++
Sbjct: 362 FGEAQSDRAWVWQTCTEFGYYQSTSSATAGPWFGGVSNLPAQY-YIDECTAIYGAAYNSQ 420
Query: 464 ARYGTTSTANA*YG 505
+ N YG
Sbjct: 421 EVQTSVDYTNQYYG 434
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 290 YGTTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGS--SPSTY 463
Y +++ +++ S S+Y+ Y + ++N+ Y S +Y Y + S + + YGS SPS Y
Sbjct: 237 YSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYSPSYYSYSSYSPSYSSYGSSYSPSYY 296
Query: 464 ARY 472
+ Y
Sbjct: 297 SNY 299
Score = 31.9 bits (69), Expect = 0.45
Identities = 15/57 (26%), Positives = 33/57 (57%)
Frame = +2
Query: 338 TYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTANA*YGS 508
++ Y +S+++++ S S+Y+ Y + ++N+ Y S +Y Y + S + + YGS
Sbjct: 233 SHESYSGSSSSSSYSSSDSSSYSSYTPSISSNSDYTSYSPSYYSYSSYSPSYSSYGS 289
>U39678-12|AAK39209.2| 1185|Caenorhabditis elegans Hypothetical
protein C39D10.7 protein.
Length = 1185
Score = 32.7 bits (71), Expect = 0.26
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 508 PPSTYARYG--TTSTANAWYGSAPSTYA-RYGTASTANARDGSTPSTYARHNPYAT 666
P +T A Y TT+T Y +A +T A +Y +T +RD TP+T H PY T
Sbjct: 1104 PTTTAAPYQPQTTTTGKVLYKAAYTTTATQYEEPATTPSRDVETPTT-TTHKPYET 1158
>Z70284-13|CAB54280.1| 639|Caenorhabditis elegans Hypothetical
protein K07F5.13c protein.
Length = 639
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 296 TTTTPNAWYWSAPSTYARYRSTSAANAWYGS---APSTYARYGTTSTANA*YGSSPSTYA 466
T TPNA S+ + ST+ + +GS A ST + +GTT+T+ G T
Sbjct: 15 TFPTPNA---PTTSSGTLFGSTTPSKPLFGSTAQASSTPSLFGTTNTSTPSGGLFGKTGT 71
Query: 467 RYGTTSTANA*YGS 508
TTSTA +G+
Sbjct: 72 STTTTSTAGTLFGA 85
>Z70284-12|CAB54278.1| 549|Caenorhabditis elegans Hypothetical
protein K07F5.13b protein.
Length = 549
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = +2
Query: 296 TTTTPNAWYWSAPSTYARYRSTSAANAWYGS---APSTYARYGTTSTANA*YGSSPSTYA 466
T TPNA S+ + ST+ + +GS A ST + +GTT+T+ G T
Sbjct: 15 TFPTPNA---PTTSSGTLFGSTTPSKPLFGSTAQASSTPSLFGTTNTSTPSGGLFGKTGT 71
Query: 467 RYGTTSTANA*YGS 508
TTSTA +G+
Sbjct: 72 STTTTSTAGTLFGA 85
Score = 27.5 bits (58), Expect = 9.8
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Frame = +2
Query: 290 YGTTTTPNAWYWS---APSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPST 460
+G+TT + S A ST + + +T+ + G T TTSTA +G++P+T
Sbjct: 30 FGSTTPSKPLFGSTAQASSTPSLFGTTNTSTPSGGLFGKTGTSTTTTSTAGTLFGAAPTT 89
Query: 461 Y----ARYGTTSTANA*YGS 508
+ +G ++T + +G+
Sbjct: 90 STATPSLFGASTTGSTPFGA 109
>U41011-5|AAA82288.2| 320|Caenorhabditis elegans Fatty acid
elongation protein 3 protein.
Length = 320
Score = 29.5 bits (63), Expect = 2.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 353 YTWHMWRGRTNTRHWELWWSHILH 282
YTWH ++ T + W +W ++ +H
Sbjct: 160 YTWHAYKDHTASGRWFIWMNYGVH 183
>Z80344-2|CAB02487.3| 608|Caenorhabditis elegans Hypothetical
protein F15D4.4 protein.
Length = 608
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +1
Query: 514 STYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTPSTYARHNPYATCNARCTPP 690
ST A TTST+ + S PST + ST ++ S P R + T T P
Sbjct: 527 STEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTTRRTTTTTP 585
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = +2
Query: 326 SAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTST 487
S ST A +TS + + S PST +TST ++ S+P R T +T
Sbjct: 524 STTSTEASTPTTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTT 577
Score = 27.5 bits (58), Expect = 9.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 296 TTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTST 427
TT+T + S PST STS ++ SAP R T +T
Sbjct: 534 TTSTSTSTSTSTPSTTTSTTSTSTTSSTSSSAPIRAVRTSTPTT 577
>U42830-2|AAC48274.1| 243|Caenorhabditis elegans Hypothetical
protein C53B7.3 protein.
Length = 243
Score = 29.1 bits (62), Expect = 3.2
Identities = 25/72 (34%), Positives = 34/72 (47%), Gaps = 14/72 (19%)
Frame = +2
Query: 284 ARYGTTTTPNAWYWSAPSTYARYRST--------------SAANAWYGSAPSTYARYGTT 421
A+YGT+ NA Y S+ Y Y +T + +N+ YGS S Y YG+
Sbjct: 147 AQYGTSYN-NAMYSSSTGNYCTYDNTCGLNQRCVNNMCQSTGSNSMYGSGSSGYNTYGSG 205
Query: 422 STANA*YGSSPS 457
+T YGSS S
Sbjct: 206 NT----YGSSNS 213
>U41994-9|AAK31523.1| 786|Caenorhabditis elegans Hypothetical
protein F59A6.3 protein.
Length = 786
Score = 29.1 bits (62), Expect = 3.2
Identities = 23/71 (32%), Positives = 31/71 (43%)
Frame = +2
Query: 296 TTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYG 475
TT+ P+ S ST +TS + S PST + T S + S PST +
Sbjct: 525 TTSGPSTTSGSTVSTTPGASTTSGSTQSTTSGPSTSSGPSTASRSTVSTTSGPSTTSGPS 584
Query: 476 TTSTANA*YGS 508
TTS + GS
Sbjct: 585 TTSGPSTTSGS 595
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/56 (35%), Positives = 27/56 (48%)
Frame = +2
Query: 326 SAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTAN 493
S PST + + S + S PST + TTS + GS+ ST + TTS N
Sbjct: 555 SGPSTSSGPSTASRSTVSTTSGPSTTSGPSTTSGPSTTSGSTKSTTSGPSTTSGKN 610
>AF125459-12|AAD12832.1| 533|Caenorhabditis elegans Hypothetical
protein Y25C1A.4 protein.
Length = 533
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/67 (29%), Positives = 34/67 (50%)
Frame = +2
Query: 296 TTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYG 475
TTT P+ + + + ++ A+ G + ST A G+T++ A G S ST A G
Sbjct: 31 TTTVPSTSTVTTTTVASTSSGSTTASTAAGGSTSTTAAGGSTASTAA--GGSTSTTAAGG 88
Query: 476 TTSTANA 496
+T++ A
Sbjct: 89 STASTAA 95
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,493,892
Number of Sequences: 27780
Number of extensions: 276288
Number of successful extensions: 905
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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