Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00778
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20980.1 68418.m02494 5-methyltetrahydropteroyltriglutamate--... 29 2.2
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 3.0
At5g20380.1 68418.m02424 transporter-related low similarity to v... 29 3.9
At2g20880.1 68415.m02461 AP2 domain-containing transcription fac... 29 3.9
At5g24350.1 68418.m02870 expressed protein weak similarity to ne... 28 5.2
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical... 28 5.2
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 28 5.2
At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutamate--... 27 9.0
At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutamate--... 27 9.0
At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein ... 27 9.0
>At5g20980.1 68418.m02494
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 812
Score = 29.5 bits (63), Expect = 2.2
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = +1
Query: 469 VWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSAPSTY 582
+W H+ + ++P +T++ Y A G+ PS Y
Sbjct: 93 IWKHMAHAGIKYIPSNTFSYYDQMLDTTAMLGAVPSRY 130
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 29.1 bits (62), Expect = 3.0
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +1
Query: 463 CQVWDHLHRQCL--VWVPPSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGS 627
C++WD + Q L ++VP + A G+TS A+ + Y GT + D +
Sbjct: 416 CRIWDARYSQWLPRIYVPSPSDANTGSTSNASQSHQILCCAYNANGTIFVTGSSDSN 472
>At5g20380.1 68418.m02424 transporter-related low similarity to
vesicular glutamate transporter 3 [Rattus norvegicus]
GI:21685382
Length = 517
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 1/55 (1%)
Frame = +1
Query: 412 WDHLHRQCLVW-VLPLHLCQVWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSAP 573
W + VW ++ H C W H CL W+P T AW P
Sbjct: 310 WKSFFQSPAVWAMIYTHFCGSWGHY--TCLSWLPTYFSEALSLNLTEAAWVSILP 362
>At2g20880.1 68415.m02461 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4 [Arabidopsis thaliana] GI:2281633
Length = 336
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 565 SAPSTYARYGTASTANARDGSTPSTYARHNPYATCNARCTPPP 693
S P + G AS+ + R T+ RHNPY + PP
Sbjct: 41 SGPGSDMWLGDASSTSPRSLRKTRTFDRHNPYLVSSYATPQPP 83
>At5g24350.1 68418.m02870 expressed protein weak similarity to
neuroblastoma-amplified protein [Homo sapiens] GI:4337460
Length = 2376
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +1
Query: 355 EHLRRQCLVWVRPLHLCQIWDHLHRQCLVWVLPLHLCQVWD 477
E ++++C+V PLH C W + R+ + +P ++ Q+ D
Sbjct: 2104 EKVKKECVVSAHPLHSC--WLDIFRKYIALSMPENVLQLID 2142
>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
member of the natural resistance-associated macrophage
protein (NRAMP) metal transporter family, PMID:11500563;
metal transport capacity has not been shown,
PMID:11500563, PMID:1038174
Length = 1294
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 290 YGTTTTPNAWYWSAPSTYARYRSTSAANAWYGSAPSTYARY 412
YG TT N Y + Y+ R+ S++ W P+T Y
Sbjct: 783 YGNTTNNNNAYELSERRYSSLRAPSSSEGWEHQQPATVHGY 823
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +2
Query: 341 YARYRSTSAANAWYGSAPSTYARYGTTSTANA*YGSSPSTYARYGTTSTANA*YGS 508
Y Y + + YG+ + A YG T+ A YGSS R + A++ YG+
Sbjct: 257 YGAYGGYTGSAGGYGAGAT--AGYGATNIPGAGYGSSTGVAPRNSWDTPASSGYGN 310
Score = 28.3 bits (60), Expect = 5.2
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +2
Query: 284 ARYGTTTTPNAWYWSAPSTYARYRSTSAANAWYGS----APSTYARYGTTSTANA*YGSS 451
A YG T P A Y S+ R + A++ YG+ + + ++ YG A S
Sbjct: 276 AGYGATNIPGAGYGSSTGVAPRNSWDTPASSGYGNPGYGSGAAHSGYGVPGAAPP--TQS 333
Query: 452 PSTYAR----YGTTSTANA*YGS 508
PS Y+ YG S +++ YG+
Sbjct: 334 PSGYSNQGYGYGGYSGSDSGYGN 356
>At3g03780.2 68416.m00387
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 765
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +1
Query: 469 VWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSAPSTY 582
+W + + ++P +T++ Y A G+ PS Y
Sbjct: 45 IWKQMSAAGIKYIPSNTFSHYDQVLDTTAMLGAVPSRY 82
>At3g03780.1 68416.m00386
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 765
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/38 (23%), Positives = 18/38 (47%)
Frame = +1
Query: 469 VWDHLHRQCLVWVPPSTYARYGTTSTANAWYGSAPSTY 582
+W + + ++P +T++ Y A G+ PS Y
Sbjct: 45 IWKQMSAAGIKYIPSNTFSHYDQVLDTTAMLGAVPSRY 82
>At1g20110.1 68414.m02516 zinc finger (FYVE type) family protein
contains Pfam profile: PF01363 FYVE zinc finger
Length = 601
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 3/65 (4%)
Frame = +1
Query: 508 PPSTYARYGTTSTANAWYGSAPSTYARYGTASTANARDGSTP-STYARHNPYA--TCNAR 678
PP+ G T Y SAP YG+A +N TP + H P + + +
Sbjct: 32 PPAPATVAGPTDLTRNTYASAPPFTGGYGSADYSNYSQNYTPYGQNSEHVPPSAPSFTSP 91
Query: 679 CTPPP 693
PPP
Sbjct: 92 SQPPP 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,589
Number of Sequences: 28952
Number of extensions: 258093
Number of successful extensions: 677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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