Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr 3...    29   0.99 
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    28   1.7  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    25   9.3  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.3  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.3  

>SPCC736.12c |||conserved protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 407 YLQMISSIISCAFQFWSESSHPSAV 333
           Y Q++S + S    FWS+SSH   V
Sbjct: 406 YAQVVSDLNSTELPFWSDSSHAGGV 430


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -1

Query: 540 FFTGVIWSIRVST*CLGLFQYFVTILSSKVFCVELQNTCCLSLLLFADDFFHNFL 376
           FFTG   S  +ST  +G F +    LS    C+EL     +   L  + FF +FL
Sbjct: 233 FFTGFFLSCTISTKYVGFFTFLSIGLS---VCLELWYLWDIKTGLTVERFFQHFL 284


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 132 KDVRHFSA--FKNIEIQPRSLLPQNSLLA 212
           K++ HF++  FKNI+IQ     P+  LLA
Sbjct: 93  KELDHFTSKPFKNIDIQNEQTNPKQLLLA 121


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +2

Query: 347 GWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRP 493
           G I   +  H  LW +  +N  R    +FC ST      +    Y   P
Sbjct: 117 GTISRLLKEHMTLWNQERSNVNRKSNVLFCWSTAYQKQKRKTASYTNSP 165


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 11/58 (18%)
 Frame = -2

Query: 743 LDIHCLI*---ACCMVQHNDMFC------AYFDHLI--SITFNRRNVKVLNKFQAKFN 603
           LD H L+     C M  HND+F       AY +++    + F++  V+V N++Q K N
Sbjct: 61  LDFHHLLTPLVVCIMDYHNDLFLTYSLSNAYREYIFDGGLPFSKHQVRV-NRYQQKIN 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,305,146
Number of Sequences: 5004
Number of extensions: 69641
Number of successful extensions: 171
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)