Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)               28   9.8  
SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  
SB_5809| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.8  

>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
          Length = 474

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 431 FCNSTQNTLLDKMVTKYWKRPKHYVETLMLHITPVKNFTSQENNLYR 571
           FCN  + T+ + +   +  R KH   T  +    +KN  + + NLY+
Sbjct: 38  FCNICKTTVKENLSRHF--RQKHKFNTAQVKTYKIKNKKTNQQNLYK 82


>SB_9028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 262 SCWVKSIFIKMSNICLLARSEF*GNKDLGCISIFLKAEKCLTSLVVSVI 116
           SC++   F K SNI L + +    N DLG ++I  +A     +L  +++
Sbjct: 69  SCYIWQTFAKPSNIVLHSTNIRQDNDDLGNLAIIRQAIYLCVTLATAIV 117


>SB_5809| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 278

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -2

Query: 437 YRTH-VALASFYLQMISSIISCAFQFWSESSHPSA 336
           Y  H V+ AS  L    S+I+CA   WS S  PS+
Sbjct: 5   YEEHAVSAASLGLMATLSLIACALGHWSGSKLPSS 39


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,767,382
Number of Sequences: 59808
Number of extensions: 479995
Number of successful extensions: 1053
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1053
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)