Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal...   116   1e-25

>BC020651-1|AAH20651.1|  170|Homo sapiens mitochondrial ribosomal
           protein L35 protein.
          Length = 170

 Score =  116 bits (278), Expect = 1e-25
 Identities = 52/79 (65%), Positives = 60/79 (75%)
 Frame = +2

Query: 254 PTRSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVF 433
           P RS+  FS +KGKRKTVKAVI RF RLH G W+R K G  KKLWKK+ A K+RLR+ VF
Sbjct: 90  PVRSLTYFSARKGKRKTVKAVIDRFLRLHCGLWVRRKAGYKKKLWKKTPARKKRLREFVF 149

Query: 434 CNSTQNTLLDKMVTKYWKR 490
           CN TQ+ LLDKM T +WKR
Sbjct: 150 CNKTQSKLLDKMTTSFWKR 168


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,978,832
Number of Sequences: 237096
Number of extensions: 2322623
Number of successful extensions: 4347
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4347
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)