Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical pr...    66   3e-11
U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine rece...    30   1.6  
U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine rec...    29   2.8  
U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated p...    29   3.7  
AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.     29   3.7  
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical p...    29   5.0  
AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical ...    29   5.0  
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative transc...    28   8.7  
U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain fami...    28   8.7  

>Z46381-7|CAA86518.2|  158|Caenorhabditis elegans Hypothetical
           protein M01F1.6 protein.
          Length = 158

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 30/78 (38%), Positives = 44/78 (56%)
 Frame = +2

Query: 269 IKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQHVFCNSTQ 448
           I+F  K G+++  + V+ RF RL+ G WI    GRHK  + K    ++    +  C   Q
Sbjct: 35  IRFDQKVGRKRPAQDVLDRFKRLNNGMWIHAHPGRHKLRYMKDETWQKTSLYYETCTKEQ 94

Query: 449 NTLLDKMVTKYWKRPKHY 502
             +LDK++T YW RPKHY
Sbjct: 95  CEILDKLMTPYWLRPKHY 112


>U41013-4|AAA82303.2|  329|Caenorhabditis elegans Serpentine
           receptor, class t protein73 protein.
          Length = 329

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = -2

Query: 674 DHLISITFNRRNVKVLNKFQAKFNYDLLITK*HYFCIGCFLVK*NSSRV*Y 522
           + LISI F+ ++ K+ N F  K  + +++     +CI CFL     SR+ Y
Sbjct: 132 NRLISIVFHFQSNKIFNSFNMKIYFTIVLI---VWCIVCFLNAFGFSRMVY 179


>U80030-10|AAG24167.2|  378|Caenorhabditis elegans Serpentine
           receptor, class w protein136 protein.
          Length = 378

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -1

Query: 516 IRVST*CLGLFQYFVTILSSKVFCVELQNTCCLSLLLFADDFFHNFLCLPILVRIQPPQC 337
           I  S+ CLG F Y++T++    F ++  +  C S  LF    F   L +   + ++  Q 
Sbjct: 95  IHASSPCLGRFSYWITLIDKSGFVIKDFSRRC-STWLFLSIAFIRTLIVRNPMNLKYKQL 153

Query: 336 SLK-NRLITAFTVFLL 292
           S +     T F VFLL
Sbjct: 154 SNQPTAFYTIFGVFLL 169


>U41021-4|AAA82334.1|  348|Caenorhabditis elegans Uncoordinated
           protein 97 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 653 RLLKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           R++K+   + H  C C E CN+ ++  G+L+
Sbjct: 92  RVIKAMNASWHPGCFCCEICNKQLADVGFLR 122


>AF035583-1|AAD09435.1|  348|Caenorhabditis elegans UNC-97 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 653 RLLKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           R++K+   + H  C C E CN+ ++  G+L+
Sbjct: 92  RVIKAMNASWHPGCFCCEICNKQLADVGFLR 122


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 41  CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 154
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 41  CKNAAFFKYCCSLCSMSSGFALTQCNYAYY*RCQTFLS 154
           C  +A    CCS+C  +     T+  YA+     TFLS
Sbjct: 17  CFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLS 54


>Z81529-12|CAB04303.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 638 HFSC*RLLKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           +FS    L+   R RH TCH    CNR I  +  L+
Sbjct: 20  YFSDDESLREHRRQRHMTCHMCLLCNRRIPENETLR 55


>AL023816-5|CAA19434.1|  492|Caenorhabditis elegans Hypothetical
           protein T05G11.1 protein.
          Length = 492

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +2

Query: 638 HFSC*RLLKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           +FS    L+   R RH TCH    CNR I  +  L+
Sbjct: 20  YFSDDESLREHRRQRHMTCHMCLLCNRRIPENETLR 55


>AF101305-7|AAF98591.1|  279|Caenorhabditis elegans Hypothetical
           protein C04F5.8 protein.
          Length = 279

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -1

Query: 447 CVELQNTCCLSLLLFADDFFHNFLCLPILVRIQPPQCSLKNRLITAFTVFLLPFFKLNFI 268
           C EL NTC +   L+ DD     +    L R   P CS ++ +   F    L   ++ F+
Sbjct: 42  CTEL-NTCEVDSFLYEDDDVEELVERDELSRTYCPVCSSRDTVPLNFISHSLSRLQVKFL 100

Query: 267 TDLV 256
            DL+
Sbjct: 101 FDLL 104


>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical
           protein C09G1.2 protein.
          Length = 1115

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = +3

Query: 126 TTKDVRHFSAFKNIEIQPRSLLPQNSLLANKQ 221
           T KD++ FS  KN+++QP S   ++S + N++
Sbjct: 492 TEKDLKSFSIKKNVQVQPCSPSLKSSDIGNER 523


>U72348-1|AAB17273.1|  355|Caenorhabditis elegans putative
           transcription factor LIM-4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 659 LKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           L  DGRN H  C     C  P+S+  + K
Sbjct: 111 LSIDGRNYHENCLQCSTCENPLSNKCFYK 139


>U39740-5|AAA80428.2|  355|Caenorhabditis elegans Lim domain family
           protein 4 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 659 LKSDGRNRHRTCHCVEPCNRPISSSGYLK 745
           L  DGRN H  C     C  P+S+  + K
Sbjct: 111 LSIDGRNYHENCLQCSTCENPLSNKCFYK 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,133,713
Number of Sequences: 27780
Number of extensions: 386971
Number of successful extensions: 959
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)