Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   7.4  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   9.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.8  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 322 LDNSLYCFPFAFF*TKLYN 266
           L+ SLYCF   FF    +N
Sbjct: 3   LNGSLYCFARLFFIIGFFN 21


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 188 VTSKFTSSQQTNIGHFNEN*FYPTRSVIKFSLKKGKRKTVKAV 316
           V S   +S   N   FNEN     RS + FS+++  +   + +
Sbjct: 272 VESWVNTSVIRNYTLFNENSEAAARSFVPFSIERSSQSVAEVM 314


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 117 LHCVRAKPEDIEHSEQQYLKNAAFLQKCYSSN 22
           L    A  EDI  +  Q  ++   + +CYSS+
Sbjct: 218 LDSTAASDEDISLTTHQQKRHKLRVTRCYSSD 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,483
Number of Sequences: 438
Number of extensions: 4495
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)