Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00776
         (783 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48575.1 68418.m06008 hypothetical protein                          29   2.6  
At5g45590.1 68418.m05601 expressed protein                             29   2.6  
At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid t...    29   4.6  
At3g60380.1 68416.m06753 expressed protein                             28   8.0  

>At5g48575.1 68418.m06008 hypothetical protein
          Length = 268

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/57 (26%), Positives = 30/57 (52%)
 Frame = +2

Query: 380 KLWKKSSANKRRLRQHVFCNSTQNTLLDKMVTKYWKRPKHYVETLMLHITPVKNFTS 550
           ++  KS+ NK +   ++ C + Q T + K +TK+ +    +VET +   T   + +S
Sbjct: 205 RIGTKSAKNKGKKDGYLTCTTAQQTEIKKTITKWEQVTTKFVETAIQSETSTTSSSS 261


>At5g45590.1 68418.m05601 expressed protein
          Length = 173

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +2

Query: 260 RSVIKFSLKKGKRKTVKAVIKRFFRLHWGGWIRTKIGRHKKLWKKSSANKRRLRQ 424
           R+ I   +KK K K   +   RF  L+ G   R K G+      KS  +KRRLRQ
Sbjct: 100 RTPITSKVKKVKIKFYSSFKDRFKPLNDGTIRRWKEGKRHNAHLKSKKSKRRLRQ 154


>At2g13820.1 68415.m01526 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 169

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 361 GPNPATPVQSKKSLDNSLYCFPFAF 287
           G N ATPV S +S D SL    FAF
Sbjct: 134 GANAATPVSSPRSSDASLLSVSFAF 158


>At3g60380.1 68416.m06753 expressed protein 
          Length = 743

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +2

Query: 203 TSSQQTNIGHFNEN*FYPTRSVIKFSLKKGKRKTVK 310
           +SS QT+    N+N F P+RSV   SL     + VK
Sbjct: 293 SSSSQTSYASQNQNRFSPSRSVSAESLNSNVEELVK 328


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,105
Number of Sequences: 28952
Number of extensions: 347253
Number of successful extensions: 789
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)