Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00774
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    29   0.73 
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    28   1.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    28   1.7  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    26   6.8  

>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +2

Query: 545 GCDICVRKTTTTYLLNTELANGQLFEPFEYSYYLFNQFFFINYHK 679
           G  + V K T TY+   +LA   LF  FE+ Y  + +++    HK
Sbjct: 561 GSSMKVAKITLTYIYAIKLA--LLFNDFEFGYAAWQEYWHCKIHK 603


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 2/25 (8%)
 Frame = +1

Query: 97  KPIR--SRGKPPRIKITRKQRTEDE 165
           KP++  SR K P+ +I R+QR EDE
Sbjct: 111 KPLKKKSRSKTPKREIARRQRDEDE 135


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 582 TY*TRNSQTGNFSNRSNIVTIYLISFFLLITIK 680
           TY  +   T NFS  SN+ TI L+   LL  ++
Sbjct: 86  TYSLQRYATSNFSAHSNLATINLVGNILLAVVR 118


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 368 PLLAKYVVKITILLLFDINKNITLILNKH 282
           PL AK ++KITILL+  +   +  +L +H
Sbjct: 257 PLNAKNIMKITILLISKLPPELYNLLARH 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,674,206
Number of Sequences: 5004
Number of extensions: 47653
Number of successful extensions: 119
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)