Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00774
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0180 - 1335825-1335980,1336584-1336670,1336767-1336859,133...    28   7.1  
11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458     28   9.4  

>12_01_0180 -
           1335825-1335980,1336584-1336670,1336767-1336859,
           1336985-1337057,1337153-1337247,1337917-1338004,
           1338135-1338424
          Length = 293

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 20/89 (22%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
 Frame = +2

Query: 488 LISPVFFFRCLAVICNAH*GCDICVRKTTTTYLLNTELANGQLFEPFEY-SYYLFNQFFF 664
           + SP+F    ++++        + V K    +L ++ +AN QL+ PF++ ++Y   Q F 
Sbjct: 184 IFSPIFIGVFMSLLVTLEGKPSLVVPKLKQEWL-SSVIANWQLWIPFQFLNFYFVPQKFQ 242

Query: 665 INYHKSILNNFSLMHVLRDE*MVFSVVGS 751
           +++ K+    F  +++L+ + M+    G+
Sbjct: 243 LDFPKATQTTF--LYLLQFKMMLIGAKGA 269


>11_06_0413 - 23242228-23242517,23242732-23243180,23243338-23244458
          Length = 619

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -1

Query: 300 FNFKQTYKHLFLPLKIKRDASI*KIQTRSVI-ALKS 196
           FNFK+      + LK+KR++S+ K +  +VI AL+S
Sbjct: 410 FNFKRNQNKSTVHLKVKRNSSVGKSEKAAVIRALRS 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,737
Number of Sequences: 37544
Number of extensions: 260613
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)