Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00773
         (702 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5TTI8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_A6RUF5 Cluster: Putative uncharacterized protein; n=1; ...    33   9.0  

>UniRef50_A5TTI8 Cluster: Putative uncharacterized protein; n=1;
           Fusobacterium nucleatum subsp. polymorphum ATCC
           10953|Rep: Putative uncharacterized protein -
           Fusobacterium nucleatum subsp. polymorphum ATCC 10953
          Length = 313

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 26/84 (30%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
 Frame = -3

Query: 394 FSRYNVGEVDNHIRNLVAISSTVSV*GRVISFFLEVVLFVIISRTSRSLLSP*CRALTTA 215
           F  Y     +N I++L+     V V  +++S FLE+  F I + TSR + +P      T 
Sbjct: 5   FKNYVDNIQENDIKSLIISPLIVLVITQILSIFLEMASFFITTFTSRIMYNP--TDYDTL 62

Query: 214 ISSRN-PRTKVNLFILERVLFLTK 146
           IS  + P   V   +L  ++FL K
Sbjct: 63  ISGTSFPSLVVYTLLLLAIIFLVK 86


>UniRef50_A6RUF5 Cluster: Putative uncharacterized protein; n=1;
           Botryotinia fuckeliana B05.10|Rep: Putative
           uncharacterized protein - Botryotinia fuckeliana B05.10
          Length = 713

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 583 LNKDSPIWKTRTKIGDSQRRTKATTMMDWTV 675
           LN   P+WK  T+I   +R + ATT+ D TV
Sbjct: 270 LNDPKPVWKYTTEIAHGRRHSFATTLPDGTV 300


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 601,053,333
Number of Sequences: 1657284
Number of extensions: 11149898
Number of successful extensions: 28152
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28143
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)