Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00773
         (702 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   2.4  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    23   2.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.2  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   7.4  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   7.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.7  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 671 VQSIIVVAFVRRCESPILVRVFHIGESLFNV 579
           + +I+ V  V   +SP L   FH+    FNV
Sbjct: 576 LNAIVEVVLVDEVQSPNLSHPFHLHGYAFNV 606



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 505 ISFHTPCPITCLNTFR 552
           + F T CPI   NTFR
Sbjct: 215 VPFVTQCPIQQGNTFR 230


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +2

Query: 242 RQKRPGSSGDDDEQNDFKKERDYPTLNRH 328
           + +R G   DDD+ ND  ++ D    N H
Sbjct: 188 KSERNGKDLDDDDMNDDDRKDDLLGNNMH 216


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 367 QPPRHYTERRDYYQNQQDLIP 429
           Q  R+Y    D YQ+ Q L+P
Sbjct: 172 QENRYYNNSPDQYQSYQILLP 192


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 505 ISFHTPCPITCLNTFR 552
           + F T CPI   NTFR
Sbjct: 215 VPFVTQCPIQQGNTFR 230



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -2

Query: 671 VQSIIVVAFVRRCESPILVRVFHIGESLFNV 579
           + +I+ +  V   + P L   FH+    FNV
Sbjct: 576 LNAIVEIVLVDEVQQPNLSHPFHLHGYAFNV 606


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 374 PDIIPREETTIKTN 415
           PDI  REE  +K N
Sbjct: 152 PDIFMREEVAVKIN 165


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 374 PDIIPREETTIKTN 415
           PDI  REE  +K N
Sbjct: 94  PDIFMREEVALKIN 107


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,514
Number of Sequences: 336
Number of extensions: 2745
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18530690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)