Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00773
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    29   0.49 
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    29   0.64 
SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.4  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    26   4.5  
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc...    25   7.9  
SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase ...    25   7.9  
SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces pom...    25   7.9  

>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 15/27 (55%), Positives = 20/27 (74%)
 Frame = -3

Query: 427 ESDPVGFDSSLFSRYNVGEVDNHIRNL 347
           +SDP+G DSSL S  +VG +DN+I  L
Sbjct: 253 DSDPLGVDSSL-SFESVGGLDNYINQL 278


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 373 PRHYTERRDYYQNQQDLIPQIFRL 444
           PRH+ ++RDY   Q+ +  Q+F L
Sbjct: 228 PRHWNQKRDYLSGQRGIERQLFEL 251


>SPAC2C4.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 608 FHIGESLFNVRLLCLVDITRNVLR----HVIGHGVWNEI 504
           F  G+S   V  +  + I + +L+    H++GHGV NEI
Sbjct: 124 FQFGDSKI-VTKIAFISILKKILKTPNLHLVGHGVENEI 161


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = +1

Query: 559 STRQRSRTLNKDSPIWKTR-TKIGD 630
           ST +    +  DSP+WK R T  GD
Sbjct: 444 STEEPEHLITTDSPVWKARFTPFGD 468


>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 290 SRFVRHHLQNFQVSSVAIMPCIN 222
           S F  HH+Q    S   I+PC+N
Sbjct: 139 SNFGPHHIQELLDSHPKIIPCVN 161


>SPCC320.14 ||SPCC330.15c|threo-3-hydroxyaspartate ammonia-lyase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 323

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -2

Query: 326 VCLGSGNLFLS*SRFVRHHLQNFQVSSVAIMPCINNRYKQQEPKN*GEFIHLGT-RAISD 150
           VCLG G L    +   RH   N +V  V   P   N  +Q   K  G  +H+ T + I+D
Sbjct: 180 VCLGGGGLLSGSALAARHFAPNCEVYGVE--PEAGNDGQQSFRK--GSIVHIDTPKTIAD 235


>SPBC36.12c |git7||SGT1-like protein Git7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +1

Query: 418 DLIPQIFRLLDELAVEV---RRXXXXXXXXXXISFHTPCPITCLNTFRVMS 561
           D+   +F+L D+L+ ++   R           I  H  C  TC+NT++  S
Sbjct: 7   DINDSLFKLSDKLSNDLAKQRNLCIVKEPSFSIEEHIKCFTTCINTYKPFS 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,288
Number of Sequences: 5004
Number of extensions: 47691
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)