Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00773
(702 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15) 30 2.1
SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45) 28 8.4
SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.4
SB_50861| Best HMM Match : Borrelia_orfA (HMM E-Value=4.4) 28 8.4
SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44) 28 8.4
SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4) 28 8.4
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 28 8.4
SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7) 28 8.4
SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089) 28 8.4
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 28 8.4
SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39) 28 8.4
SB_38334| Best HMM Match : RVT_1 (HMM E-Value=5.60519e-45) 28 8.4
SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14) 28 8.4
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_4888| Best HMM Match : DUF104 (HMM E-Value=7.3) 28 8.4
>SB_50468| Best HMM Match : Kazal_1 (HMM E-Value=1.3e-15)
Length = 1724
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +1
Query: 352 YGYDYQPPRHYTE-RRDYYQNQQDLIPQIF 438
Y Y Y+ PRHYTE R + + N D+ +F
Sbjct: 750 YSYLYELPRHYTECRTELWLNNTDMRGSVF 779
>SB_26233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = +2
Query: 245 QKRPGSSGDDDEQNDFKKERDYPTLNRHRRG 337
Q + GS DDDE+ + ++E++ L + ++G
Sbjct: 199 QSKSGSESDDDEEEEEEEEKEEKKLTQKKKG 229
>SB_59792| Best HMM Match : RVT_1 (HMM E-Value=4.2039e-45)
Length = 565
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 132 NYRPVSLTSVTCKILEHVICHHVWQHL 158
>SB_51388| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 670
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 132 NYRPVSLTSVTCKILEHVICHHVWQHL 158
>SB_50861| Best HMM Match : Borrelia_orfA (HMM E-Value=4.4)
Length = 373
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 261 NYRPVSLTSVTCKILEHVICHHVWQHL 287
>SB_42960| Best HMM Match : RVT_1 (HMM E-Value=2.38221e-44)
Length = 455
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 22 NYRPVSLTSVTCKILEHVICHHVWQHL 48
>SB_41006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 725
Score = 27.9 bits (59), Expect = 8.4
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +2
Query: 242 RQKRPGSSGDDDEQNDFKKERDYPT-LNRHRRGDGN*ITDMIINLPDIIPREETTIKTNR 418
R+K SS DD N+FK E D+ T + + D D++I L +++ +K +R
Sbjct: 131 REKSRKSSRYDDFFNEFKDEMDFETPFKKFKVQDPPIERDLLIGLEELLRGSTKRMKLSR 190
>SB_38793| Best HMM Match : RepA_N (HMM E-Value=3.4)
Length = 465
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 409 NYRPVSLTSVTCKILEHVICHHVWQHL 435
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 711 NYRPVSLTSVTCKILEHVICHHVWQHL 737
>SB_11125| Best HMM Match : Borrelia_orfA (HMM E-Value=2.7)
Length = 547
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 451 NYRPVSLTSVTCKILEHVICHHVWQHL 477
>SB_7753| Best HMM Match : RVT_1 (HMM E-Value=0.089)
Length = 723
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 336 NYRPVSLTSVTCKILEHVICHHVWQHL 362
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 693 NYRPVSLTSVTCKILEHVICHHVWQHL 719
>SB_48371| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 811
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 235 NYRPVSLTSVTCKILEHVICHHVWQHL 261
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 1858 NYRPVSLTSVTCKILEHVICHHVWKHL 1884
>SB_39321| Best HMM Match : RVT_1 (HMM E-Value=4.5e-39)
Length = 900
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 467 NYRPVSLTSVTCKILEHVICHHVWQHL 493
>SB_38334| Best HMM Match : RVT_1 (HMM E-Value=5.60519e-45)
Length = 435
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 132 NYRPVSLTSVTCKILEHVICHHVWQHL 158
>SB_25508| Best HMM Match : RVT_1 (HMM E-Value=6e-14)
Length = 832
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 451 NYRPVSLTSVTCKILEHVICHHVWQHL 477
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 690 NYRPVSLTSVTCKILEHVICHHVWQHL 716
>SB_4888| Best HMM Match : DUF104 (HMM E-Value=7.3)
Length = 242
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 584 NVRLLCLVDITRNVLRHVIGHGVWNEI 504
N R + L +T +L HVI H VW +
Sbjct: 132 NYRPVSLTSVTCKILEHVICHHVWQHL 158
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,194,511
Number of Sequences: 59808
Number of extensions: 362905
Number of successful extensions: 1029
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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