Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00773
         (702 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila...    30   1.7  
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila...    30   1.7  
At1g48380.1 68414.m05404 root hair initiation protein root hairl...    29   3.9  
At1g02970.1 68414.m00267 protein kinase, putative similar to Wee...    29   3.9  
At5g47450.1 68418.m05853 major intrinsic family protein / MIP fa...    27   9.1  
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    27   9.1  

>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 328 P*RRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 432
           P   +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 20  PNPNYQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
           to ATP-dependent RNA helicases
          Length = 505

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 328 P*RRWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQ 432
           P   +Q   GY   PP  Y +R +Y QN Q    Q
Sbjct: 20  PNPNYQSRSGYQQHPPPQYVQRGNYAQNHQQQFQQ 54


>At1g48380.1 68414.m05404 root hair initiation protein root hairless
           1 (RHL1)
          Length = 355

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +2

Query: 257 GSSGDDDEQNDFKKERDYPTLNRHRRGDGN*ITDMIINLPDIIPREETTIKT 412
           G++ D+DE+   + E    T +R    DGN IT     LP+ +P +   +K+
Sbjct: 273 GNTSDEDEKPLLEPESS--TRSREESQDGNGITASASKLPEELPAKREKLKS 322


>At1g02970.1 68414.m00267 protein kinase, putative similar to
           Wee1-like protein GI:5821717 from [Zea mays]
          Length = 500

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +1

Query: 514 HTPCPITC--LNTFRVMSTRQRSRTLNKDSPIWKTRTKIGDSQ 636
           H+PCP +   LNT +    RQ S T N  +  W ++ ++ + +
Sbjct: 122 HSPCPRSPVKLNTVKSKRCRQESFTGNHSNSTWSSKHRVDEQE 164


>At5g47450.1 68418.m05853 major intrinsic family protein / MIP
           family protein contains Pfam profile: MIP PF00230
          Length = 250

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 631 NPQFWFVSSISGNLCLMSGFFVWL 560
           NP      +I GN+ L++GFF W+
Sbjct: 83  NPAVTLGLAIGGNITLITGFFYWI 106


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 337  RWQLNYGYDYQPPRHYTERRDYYQNQQDLIPQIFRLLDELAVEVRR 474
            R+Q ++G + + P+ YT R + +Q   D +    R+ + L  EV+R
Sbjct: 1271 RYQDSHGTEGESPQRYTSRLERHQRTADRV----RIAETLDTEVKR 1312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,212,030
Number of Sequences: 28952
Number of extensions: 254830
Number of successful extensions: 670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1506636208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)