Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00772
         (564 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...   146   1e-36
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.62 
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   4.4  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   5.8  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score =  146 bits (355), Expect = 1e-36
 Identities = 65/104 (62%), Positives = 84/104 (80%)
 Frame = +2

Query: 197 KNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDN 376
           K +   E  L     +  +++D+FL P LNDEV+K++PVQKQTRAGQRTRFKAFV IGD+
Sbjct: 48  KIKSIEEIYLYSLPIKEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDS 106

Query: 377 NGHIGLGVKCSKEVATAIRGAIILAKLSVLPVRRGYWGNKIGKP 508
           +GH+GLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G P
Sbjct: 107 DGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDP 150



 Score = 64.9 bits (151), Expect = 8e-12
 Identities = 26/39 (66%), Positives = 35/39 (89%)
 Frame = +3

Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
           ++++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIKE++
Sbjct: 28  RDEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQ 66



 Score = 34.7 bits (76), Expect = 0.009
 Identities = 14/19 (73%), Positives = 17/19 (89%)
 Frame = +1

Query: 508 NTVPCKVTGKCGSVAVRLI 564
           +TVP KV+GKCGSV VRL+
Sbjct: 151 HTVPVKVSGKCGSVTVRLV 169


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 135 RAHDHGRDHDRVHEDRRGLYLHRVIRXRRENRHVHRLEQRPP 10
           ++HDHG  H + H DR      +  R  R++R     ++ PP
Sbjct: 720 QSHDHGHSHSKSH-DREKEKEKKKDREHRKHRETEEEDEGPP 760


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 19/51 (37%), Positives = 30/51 (58%)
 Frame = -2

Query: 302 SLEPHHSGTGRGRNQ*LEFFDW*RKQVNALEFVDFSFAYKTAEFGDRNPLF 150
           +L PHH  TG  + +    +D+    V++LE V  + A +T E+ DRNPL+
Sbjct: 369 NLLPHHR-TGT-KYRAYPTYDFACPIVDSLEGV--THALRTTEYRDRNPLY 415


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -3

Query: 463 NRQLSKDNSASNGSGDFLAALHTQTNMTVVVANGNKCLETCALSG 329
           +R LS     + GSG     L    N+T+ +A+G     T  +SG
Sbjct: 373 SRNLSSSLQQTGGSGRLFVRLMEIRNLTIPLASGMTTRFTYTISG 417


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 508 WLSDLVTPVTSSNW*NRQLSKDNSASN 428
           ++S++VTP T++NW N   S  +S S+
Sbjct: 192 YVSEVVTPTTTNNW-NSSSSFTSSTSS 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,181,720
Number of Sequences: 5004
Number of extensions: 43952
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)