Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00772
(564 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0386 + 33555682-33556344,33557138-33557299 151 3e-37
07_01_0756 + 5819367-5820038,5820847-5821005 149 2e-36
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216... 47 1e-05
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871 41 6e-04
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509... 29 2.6
08_01_0312 + 2764744-2767390,2767632-2767990 27 7.8
>03_06_0386 + 33555682-33556344,33557138-33557299
Length = 274
Score = 151 bits (367), Expect = 3e-37
Identities = 69/80 (86%), Positives = 75/80 (93%)
Frame = +2
Query: 269 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 448
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GDNNGH+GLGVKC+KEVATAIRGAIIL
Sbjct: 81 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVATAIRGAIIL 140
Query: 449 AKLSVLPVRRGYWGNKIGKP 508
AKLSV+PVRRGYWGNKIG+P
Sbjct: 141 AKLSVVPVRRGYWGNKIGQP 160
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/39 (58%), Positives = 34/39 (87%)
Frame = +3
Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++++WVPVTKLGRLV+EG+ K+E IYL SLP+KE +
Sbjct: 38 RQEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVKEHQ 76
Score = 39.5 bits (88), Expect = 0.002
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +1
Query: 508 NTVPCKVTGKCGSVAVRLI 564
+TVPCKVTGKCGSV VR++
Sbjct: 161 HTVPCKVTGKCGSVTVRMV 179
>07_01_0756 + 5819367-5820038,5820847-5821005
Length = 276
Score = 149 bits (360), Expect = 2e-36
Identities = 68/80 (85%), Positives = 74/80 (92%)
Frame = +2
Query: 269 LGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIIL 448
L P L DEV+KI PVQKQTRAGQRTRFKAFV +GD +GH+GLGVKC+KEVATAIRGAIIL
Sbjct: 84 LVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVATAIRGAIIL 143
Query: 449 AKLSVLPVRRGYWGNKIGKP 508
AKLSV+PVRRGYWGNKIGKP
Sbjct: 144 AKLSVVPVRRGYWGNKIGKP 163
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/39 (61%), Positives = 34/39 (87%)
Frame = +3
Query: 138 KEDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
++++++WVPVTKLGRLV+E KI K+E IYL SLP+KE +
Sbjct: 41 RQEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVKEHQ 79
Score = 41.1 bits (92), Expect = 6e-04
Identities = 16/21 (76%), Positives = 19/21 (90%)
Frame = +1
Query: 502 KANTVPCKVTGKCGSVAVRLI 564
K +TVPCKVTGKCGSV VR++
Sbjct: 162 KPHTVPCKVTGKCGSVTVRMV 182
>03_04_0238 -
19219040-19219218,19220296-19220350,19221606-19221690,
19222068-19222798
Length = 349
Score = 46.8 bits (106), Expect = 1e-05
Identities = 21/63 (33%), Positives = 39/63 (61%)
Frame = +2
Query: 284 NDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSV 463
++ V+++ V K + G++ F+A V +GD GH+G+GV +KEV AI A + + ++
Sbjct: 171 SERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEVTEAITKAAMNGRRNL 230
Query: 464 LPV 472
+ V
Sbjct: 231 VTV 233
>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
Length = 233
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +2
Query: 356 FVAIGDNNGHIGLGVKCSKEVATAIRGAIILA 451
FV +GD + HI LGVKC+K AT + GAIILA
Sbjct: 2 FVVVGDGDSHIELGVKCAK--ATTMSGAIILA 31
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = +1
Query: 499 RKANTVPCKVTGKCGSVAVRLI 564
RK +TV CKV K GSV VR++
Sbjct: 46 RKPHTVSCKVADKYGSVTVRMM 67
>11_04_0439 +
17749634-17749858,17750164-17750301,17750770-17750943,
17751099-17751184,17751264-17751525,17751616-17751815,
17753631-17754086,17754198-17754474,17754694-17754828,
17754946-17755026,17756305-17756400,17756676-17756771,
17756844-17756900,17756975-17757043,17757158-17757237,
17758185-17758329,17758422-17758511,17758914-17758994,
17759103-17759198,17759279-17759335,17759417-17759461,
17759547-17759612,17760304-17760350,17762771-17762865,
17763375-17763393,17763438-17763498,17763637-17763660
Length = 1085
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 418 DFLAALHTQTNMTVVVANGNKCLETCALSGTCLFLYRHD 302
+F+A LHT +M V +E C LS F+ +HD
Sbjct: 655 EFIAYLHTYVDMLHKVDEIGDTMEDCYLSSPIKFVSKHD 693
>08_01_0312 + 2764744-2767390,2767632-2767990
Length = 1001
Score = 27.5 bits (58), Expect = 7.8
Identities = 20/42 (47%), Positives = 23/42 (54%)
Frame = +3
Query: 336 SAHVSRHLLPLATTTVILVWV*SAARKSPLPFEALLSLLSCL 461
+ HV LLPLAT T +A +PLP ALLSL S L
Sbjct: 5 AVHVLLLLLPLATIT--------SASSAPLPLLALLSLRSSL 38
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,995,432
Number of Sequences: 37544
Number of extensions: 319036
Number of successful extensions: 957
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 956
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -