Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00772
(564 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 140 5e-34
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 30 1.0
Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical pr... 29 3.1
Z81454-2|CAB03804.2| 346|Caenorhabditis elegans Hypothetical pr... 28 4.0
AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear recep... 28 4.0
AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormo... 28 4.0
Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.3
Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical pr... 27 9.3
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related... 27 9.3
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 140 bits (340), Expect = 5e-34
Identities = 68/89 (76%), Positives = 76/89 (85%)
Frame = +2
Query: 242 QRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 421
+ +ID L +L DEVLKI PVQKQT AGQRTRFKAFVAIGD+ GH+GLGVKCSKEVA
Sbjct: 86 KEFEIIDA-LCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144
Query: 422 TAIRGAIILAKLSVLPVRRGYWGNKIGKP 508
TAIRGAI+ AKL+V+PVRRGYWGNKIG P
Sbjct: 145 TAIRGAIVAAKLAVVPVRRGYWGNKIGLP 173
Score = 59.7 bits (138), Expect = 1e-09
Identities = 28/38 (73%), Positives = 30/38 (78%)
Frame = +3
Query: 141 EDQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKEFE 254
E + EW PVTKLGRLV+E KI LE IYL SLPIKEFE
Sbjct: 52 EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFE 89
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +1
Query: 508 NTVPCKVTGKCGSVAVRLI 564
+TVPCKVTGKC SV VRLI
Sbjct: 174 HTVPCKVTGKCASVMVRLI 192
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +2
Query: 191 RRKNRQTREHLLVFFTNQRIRVIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFK-AFVAI 367
R++ R T ++ + T +RIRV F + S +L +PV+K+ + RF A+++
Sbjct: 24 RKRRRATPKYRNLHATRERIRVESFNMAFSQLRALLPTLPVEKKLSKIEILRFSIAYISF 83
Query: 368 GDN 376
DN
Sbjct: 84 LDN 86
>Z70681-3|CAA94579.2| 403|Caenorhabditis elegans Hypothetical
protein C30F2.3 protein.
Length = 403
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 481 TSSNW*NRQLSKDNSASNGSG 419
TS+NW N QL NS + GSG
Sbjct: 309 TSTNWQNNQLGVSNSGAPGSG 329
>Z81454-2|CAB03804.2| 346|Caenorhabditis elegans Hypothetical
protein B0391.4 protein.
Length = 346
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 453 SCLFYQFEEVTGVTRSESQHRPLQGHRQVWFCSST 557
S LFY FEE G++ S S++ PL G+ +F S+T
Sbjct: 76 SFLFYSFEESFGLSGSWSRNIPLAGY--TFFHSAT 108
>AY305847-1|AAR11991.1| 461|Caenorhabditis elegans nuclear receptor
NHR-121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 295 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 438
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>AF099915-4|AAC68773.2| 461|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 121 protein.
Length = 461
Score = 28.3 bits (60), Expect = 4.0
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +1
Query: 295 SKDHACTETNTCRTAHTFQGICCHWRQQRSYWFGCE--VQQGSRHCHSRR 438
+++ CT NTCR + + IC R + G E Q R C++ R
Sbjct: 53 NRNFVCTHQNTCRVNYAMRVICRACRYHKCINMGMERSAVQPRRDCNAGR 102
>Z74041-9|CAA98523.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 361 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 275
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>Z74035-5|CAA98485.2| 801|Caenorhabditis elegans Hypothetical
protein F47G9.3 protein.
Length = 801
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 361 NKCLETCALSGTCLFLYR-HDL*NLIIQGR 275
++CLE C +S C F Y+ D+ N +I R
Sbjct: 286 SECLEKCTMSEECRFAYQSKDMNNCLISRR 315
>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
protein protein.
Length = 1584
Score = 27.1 bits (57), Expect = 9.3
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +3
Query: 456 CLFYQFEE-VTGVTRSESQHRP 518
CL Y +E VT V R E++HRP
Sbjct: 479 CLIYYLKEGVTSVGRPEAEHRP 500
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,413,178
Number of Sequences: 27780
Number of extensions: 262203
Number of successful extensions: 783
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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